Collection Site(s)
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Sequence: COI-5P
| Sequence ID: | ABMWC162-09.COI-5P | GenBank Accession: | JF436025 |
|---|---|---|---|
| Primers Forward: | VF1_t1 (TGTAAAACGACGGCCAGTTCTCAACCAACCACAAAGACATTGG, VF1d_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCACAARGAYATYGG, LepF1_t1:TGTAAAACGACGGCCAGTATTCAACCAATCATAAAGATATTGG, VF1i_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCAIAAIGAIATIGG) | Primers Reverse: | VR1_t1 (CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCAAAGAATCA, VR1d_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCRAARAAYCA, LepR1_t1:CAGGAAACAGCTATGACTAAACTTCTGGATGTCCAAAAAATCA, VR1i_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGICCIAAIAAICA) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| ACTTTATATATAGTATTTGGTGCTTGAGCCGGTATAGTAGGCACAGCCCTAAGCATTCTAATTCGTGCTGAATTAGGCCAACCAGGCGCACTACTAGGTGATGACCAAATCTATAATGTAATCGTTACTGCTCACGCATTTGTTATAATTTTCTTTATAGTTATGCCTATCATACTTGGAGGTTTTGGAAATTGACTTATTCCTCTAATGATTGGTGCCCCCGATATAGCTTTCCCACGTATAAACAATATAAGCTTTTGACTACTTCCTCCCTCATTCCTATTACTTCTAGCTTCATCAACCGTAGAAGCAGGAGCAGGAACAGGCTGAACCGTTTATCCCCCACTAGCCGGTAACTTAGCCCACGCAGGAGCATCCGTTGACCTAGCAATTTTTTCCCTACACCTAGCAGGTGTCTCATCAATCTTAGGCTCAATTAATTTTATTACTACTATTATTAACATAAAACCTCCCGCAATATCTCAATATCAAACACCATTATTTGTATGATCTGTCTTAATTACAGCAGTATTGCTACTCCTTTCACTTCCAGTACTTGCAGCTGGAATTACAATATTATTAACAGATCGTAATCTTAACACTACATTCTTTGATCCCGCTGGAGGTGGAGACCCTATTCTTTATCAACACTTATTC | |||
| Locus: | COI-5P | ||
| Nucleotides: | 657 bp | ||
| Sequence Upload Date: | 2016-06-30 | ||
Attribution
| Specimen Depository: | Centre for Biodiversity Genomics |
|---|---|
| Sequencing Center: | Centre for Biodiversity Genomics |
| Photography: | Caitlin Vandermeer |
| Collectors: | J.S.Millar, E.Y.Liu |
| Specimen Identification: | Eddie Y. Liu |
Identifiers
| Process ID: | ABMWC162-09 | Sample ID: | HLC-16348 | |||
|---|---|---|---|---|---|---|
| Record Created: | Museum ID: | HLC-16348 | ||||
| Collection Code: | BIOUG | Field ID: | KA-EL-015 | |||
| Deposited In: | Centre for Biodiversity Genomics | |||||
| Associated Datasets: | DS-EBACMAMM | Mammalia for eDNA Detection | |||||
| Specimen Linkout: | ||||||
| Checksum: | bbf22d7123876bb3f23a9e18e3a15ffc | |||||
Taxonomy
| Kingdom: | Animalia | Subfamily: | Soricinae |
|---|---|---|---|
| Phylum: | Chordata | Tribe: | |
| Class: | Mammalia | Genus: | Sorex |
| Order: | Eulipotyphla | Species: | Sorex cinereus |
| Family: | Soricidae | Scientific Name Authorship: | Kerr, 1792 |
| BIN ID: | BOLD:ACF5665 | Subspecies: | |
| Identification Method: | |||
| Taxonomy Notes: | |||
| * Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings | |||
Specimen
| Voucher Status: | Reproduction: | S | |
|---|---|---|---|
| Tissue Descriptor: | Sex: | F | |
| Brief Note: | Life Stage: | ||
| Detailed Notes: | Longworth trap, overnight, died in trap | ||
Collection
| Country/Ocean: | Canada (CA) | Collection Date Start: | 2008-07-23 |
|---|---|---|---|
| Province/State: | Alberta | Collection Date End: | |
| Region/County: | Kananaskis | Coord. Source: | |
| Sector: | HWY 40, Grizzly Creek | Coord. Accuracy: | |
| Exact Site: | Elevation: | 1670 | |
| Habitat: | Elevation Accuracy: | ||
| Latitude: | 50.7649 | Depth: | |
| Longitude: | -115.143 | Depth Accuracy: | |
| Sampling Protocol: | |||
| Collectors: | J.S.Millar, E.Y.Liu | ||
| Collection Note: | |||
Ecology
| Realm: | Nearctic |
|---|---|
| Biome: | |
| Ecoregion: | Northern_Rockies_conifer_forests |
Publications
Electropherogram Trace Files
Under development - available shortly
Controller URLs
http://portal.boldsystems.org/record/ABMWC162-09 http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3AABMWC162-09&fields=marker_code http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3AABMWC162-09&extent=limited http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsXJ08g13NjQz0jWwtM7JzM0sSU0BAMWgCz0=?length=1