Collection Site(s)



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Sequence: ITS

Sequence ID: BARLI126-11.ITS GenBank Accession:
Primers Forward: ITS1-F (CTTGGTCATTTAGAGGAAGTAA) Primers Reverse: ITS4A (CGCCGTTACTGGGGCAATCCCTG)
Sequence Run Site: Royal Botanic Garden Edinburgh
ATGAGTTCGGGGGCCAAGCCCCCAGCGGCGAGTATCGTTGAGTCCCCCGGGACTTAACGCCGGTCGTCGTGTTTCTCAACCCCATGTTTACCATACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGTTGGCCCCAAGCTTTATTGCTTGGGGGCGGCCTGCGCCCGTCAGAGGTTTAACCAAATTCTATTTATAAGTGATGTCTGAGCAATTATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGATATCCGCGGGCCTTTTTACAAGGGCTTGCGGGTCCGAAAAACAGTGGCGGCCCCCGAGGATTTCGCGCGTAGTAAATATTATCCCGCGTCGGAAAGAATCGGTGGGCTTGCCATAACCCCCCATAATCTCCATAGATTGACCTCGGATCAGGTAGGGAT
Locus: ITS
Nucleotides: 582 bp
Sequence Upload Date: 2011-03-06

Attribution

Specimen Depository: Royal Botanic Garden Edinburgh
Sequencing Center: Royal Botanic Garden Edinburgh
Photography:
Collectors: CJ Ellis, P Harrold
Specimen Identification:

Identifiers

Process ID: BARLI126-11 Sample ID: EDNA09-02399
Record Created: 2011-02-03 Museum ID: s.n.
Collection Code: 91 Field ID: s.n.
Deposited In: Royal Botanic Garden Edinburgh
Associated Datasets:
Specimen Linkout:
Checksum: 5c130ba41b2c0795e2d9df653710a3c9

Taxonomy

Kingdom: Fungi Subfamily:
Phylum: Ascomycota Tribe:
Class: Lecanoromycetes Genus: Cladonia
Order: Lecanorales Species: Cladonia chlorophaea
Family: Cladoniaceae Scientific Name Authorship: (Flörke ex Sommerf.) Spreng.
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes:
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: United Kingdom (GB) Collection Date Start: 2009-12-10
Province/State: Scotland Collection Date End:
Region/County: East-Invernesshire Coord. Source: NN779997
Sector: Coord. Accuracy:
Exact Site: Invertromie Farm Elevation:
Habitat: Elevation Accuracy:
Latitude: 57.072 Depth:
Longitude: -4.014 Depth Accuracy:
Sampling Protocol:
Collectors: CJ Ellis, P Harrold
Collection Note:

Ecology

Realm: Palearctic
Biome:
Ecoregion: Caledon_conifer_forests

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/BARLI126-11
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ABARLI126-11&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ABARLI126-11&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsXJyDPLxNDQy0zU0tM7JzM0sSU0BAMVeCzY=?length=1

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