Specimen Images



Collection Site(s)



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Sequence: ITS2

Sequence ID: BRALT002-18.ITS2 GenBank Accession:
Primers Forward: ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) Primers Reverse: ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnFGAAf (ATTTGAACTGGTGACACGAG)
Sequence Run Site: Centre for Biodiversity Genomics
TCTTGGCTCTTGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCCGCGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCTTGTCCGAGGGCATTTCCGCTAGAGCGTCACCGCGCCCCCCACCCGCCCACTCCCGCCGGGAGTTGGGTGGCGTGAAAGTGGCCGTCCCGGCGTCGGGCTTCGCGGCCTGACTGCGGGTCGGCTGAAATGGAAGGAATCGGGCCGCCGTGGTGACACAGTCCGCGATCGGGTGATCCGCGCTCCTTCGGGAGCGCGGAATTTTTCTAAGTGCGTGGCTGCGTCCCCAGTTGGCTCCGGTTACCTCGTGCAGGTCGGGCGCGCCCCCCGAATGGGGCGGCGCGCGTCACGTCACGCATCAGACCTCTAATCGGAAAAGACTACCCGCTGAATTTAA
Locus: ITS2
Nucleotides: 440 bp
Sequence Upload Date: 2024-06-11

Sequence: rbcLa

Sequence ID: BRALT002-18.rbcLa GenBank Accession:
Primers Forward: ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) Primers Reverse: ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnFGAAf (ATTTGAACTGGTGACACGAG)
Sequence Run Site: Centre for Biodiversity Genomics
AGGTGTTGGATTTAAAGCTGGTGTTAAAGATTACAGATTAACTTATTACACTCCAGATTATCAGACTAAAGAAACTGATATTTTAGCGGCATTTCGAATGACTCCTCAACCAGGAGTACCCGCTGAAGAGGCAGGAGCTGCAGTAGCTGCGGAATCTTCCACTGGTACATGGACCACTGTTTGGACTGATGGACTTACCAGTCTTGATCGTTATAAAGGACGATGCTATGATCTTGAAGCAGTTCCTGGAGAAGAGAATCAATATATTGCTTATGTTGCTTACCCATTAGATTTATTTGAAGAAGGTTCTGTTACCAATTTATTTACTTCTATTGTTGGTAATGTTTTTGGATTTAAAGCTTTACGAGCTTTACGTCTAGAAGATTTACGTATTCCTCCAGCTTATTCCAAAACTTTCCAAGGCCCACCTCATGGTATTCAAGTTGAAAGAGATAAATTAAATAAATATGGTCGTCCATTATTAGGATGTACTATTAAGCCAAAATTAGGTTTATCTGCTAAAAACTATGGTAGAGCTGTATATGAATGTCTT
Locus: rbcLa
Nucleotides: 553 bp
Sequence Upload Date: 2019-09-20

Sequence: trnL-F

Sequence ID: BRALT002-18.trnL-F GenBank Accession:
Primers Forward: ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) Primers Reverse: ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnFGAAf (ATTTGAACTGGTGACACGAG)
Sequence Run Site: Centre for Biodiversity Genomics
GACTTAAATAATTTGAGCGTTAGTAGAAAAACTTACTAAATGCTAGCTTTCAGATTCAGGGAAACTTAGGTTGATAAAAATATAAGCAATCCTGAGCCAAATCTTATTTCCTTTTGTTTGAGGATAAAATAGGTGCAGAGACTCAATGGAAGCTATCCTAACGAATAATATTTTTAAAATTAGTTAAAATTTATTTTTTAGGTATTAAGCGAGGATAAAGATAGAGTCCAATTTTACATGTTAATCTTAGCAACAATTTAAATTGTAGTAGGAAGAAAATCCGTTGGCTTTATTGACCGTGAGGGTTCAAGTCCCTCTACCCCCAAAACTATAATTTTTTATTGACATAAACTGGAAGTTTATGTTAGGATAAGCCAATAAAAAAAGCCGGAATAGCTCAGTTGGTAGAGCAGAGGACTGAAAATC
Locus: trnL-F
Nucleotides: 426 bp
Sequence Upload Date: 2019-09-20

Attribution

Specimen Depository: University of Alberta, Cryptogamic Herbarium
Sequencing Center: Centre for Biodiversity Genomics
Photography: Masha L. Kuzmina
Collectors: P. Barclay
Specimen Identification:

Identifiers

Process ID: BRALT002-18 Sample ID: CCDB-25691-G01
Record Created: 2018-01-31 Museum ID: 001116
Collection Code: ALTA Field ID: 12088
Deposited In: University of Alberta, Cryptogamic Herbarium
Associated Datasets: DS-BITSR | Verified ITS2 reference library for the bryophytes of Canada
Specimen Linkout:
Checksum: 458172dad7d72bf2b346882048dc8c9a

Taxonomy

Kingdom: Plantae Subfamily:
Phylum: Bryophyta Tribe:
Class: Bryopsida Genus: Amblystegium
Order: Hypnales Species: Amblystegium serpens
Family: Amblystegiaceae Scientific Name Authorship: W. P. Schimper in B.S.G., 1853
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes: Taxonomy was changed from Amblystegium juratzkanum in accordance with FNA: http://www.efloras.org/florataxon.aspx?flora_id=1&taxon_id=200002146
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: Canada (CA) Collection Date Start: 1975-05-13
Province/State: Ontario Collection Date End:
Region/County: Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Thunder Bay District: Midway between gatehouse and Lookout, Mount McKay, 50m W of road, E1N Elevation: 286
Habitat: On rotton wood, black ash, white birch swamp Elevation Accuracy:
Latitude: 48.35 Depth:
Longitude: -89.2833 Depth Accuracy:
Sampling Protocol:
Collectors: P. Barclay
Collection Note:

Ecology

Realm: Nearctic
Biome:
Ecoregion: Western_Great_Lakes_forests

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/BRALT002-18
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ABRALT002-18&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ABRALT002-18&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsXIKcvQJMTAw0jW0sM7JzM0sSU0BAMX7C0E=?length=3

AJAX URLs


                

            

        

    






    


    

        

            

                
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