Specimen Images



Sequence: ITS2

Sequence ID: BRALT193-18.ITS2 GenBank Accession:
Primers Forward: ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) Primers Reverse: ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnFGAAf (ATTTGAACTGGTGACACGAG)
Sequence Run Site: Centre for Biodiversity Genomics
TCTTGGCTCTTGCAACGATGAAGAACGCAGCGAAATGCGAAATTTAATGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCTTGTCCGAGGGCATTTCCGCTAGAGCGTCACCGCGCCCCCCCACCCATCCGCTCCCAGCGAGTCGGGTGGAGTGCAAATGGCCGTCCCCGCGCGTCTCTCGTCTCTTCCTCTCCCGAGGAAAAGAAGGAGAAGAGTCGGGGTCGGCTGAAATGGAAGGAATCTGGCCGCCGTGGTGAGACGCAGTCCGCGATCGGGTGGTCCGAGCTCGCTCCTCTCTCGGAATTCTCTTTCGAGAGGGAGGCAGTCCGGAGTTTTTCTAAGTGCGTGTCTGCGTCCCCCAGTCGGCCGTTTGCGTTTCCTCTCGTGCAGGTGTCCCGTGCCGGTGTCTCGCCCCCTCCTCCCCCCTCCCTCGGGAAGGTGGAGTGTGCGGTCGAGCGCCGGCCCAGGCGTCACGCATCAGACCTCTAATCGGAAAAGACTACCCGCTGAATTTAA
Locus: ITS2
Nucleotides: 541 bp
Sequence Upload Date: 2024-06-14

Sequence: rbcLa

Sequence ID: BRALT193-18.rbcLa GenBank Accession:
Primers Forward: ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) Primers Reverse: ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnFGAAf (ATTTGAACTGGTGACACGAG)
Sequence Run Site: Centre for Biodiversity Genomics
AGGTGTTGGATTTAAAGCTGGTGTTAAAGATTACAGATTAACTTATTACACTCCAGATTATCAAACTAAAGAAACTGATATTTTAGCAGCATTTCGAATGACTCCTCAACCAGGAGTACCCGCTGAAGAAGCAGGAGCTGCAGTAGCTGCGGAATCTTCCACTGGTACATGGACCACTGTTTGGACTGATGGACTGACCAGTCTTGATCGTTATAAAGGACGATGCTATGATCTTGAAGCAGTTGCTGGAGAAGATAATCAATATATTGCTTATGTTGCTTACCCATTAGATTTATTTGAAGAAGGTTCTGTTACCAATTTATTCACTTCTATTGTTGGTAATGTATTTGGATTTAAAGCTTTACGAGCTTTACGTCTAGAAGATTTACGTATTCCTCCAGCTTATTCCAAAACTTTTCAAGGCCCACCTCATGGTATTCAAGTTGAAAGAGATAAATTAAATAAATATGGTCGTCCATTATTAGGATGTACTATTAAGCCAAAATTAGGTTTATCTGCTAAAAACTATGGTAGAGCTGTATATGAATGTCTT
Locus: rbcLa
Nucleotides: 553 bp
Sequence Upload Date: 2019-09-20

Sequence: trnL-F

Sequence ID: BRALT193-18.trnL-F GenBank Accession:
Primers Forward: ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) Primers Reverse: ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnFGAAf (ATTTGAACTGGTGACACGAG)
Sequence Run Site: Centre for Biodiversity Genomics
GACTTAAATAATTTGAGCGTTAGTAGAAAAACTTACTAAATGCTAGCTTTCAGATTCAGGGAAACTTAGGCTGATAAAAATATAAGCAATCCTGAGCCAAATCTTATTTCGTTTGAAAATAAAATAGGTGCAGAGACTCGATGGAAGCTATCCTAACGAATACTATTTTACAAATTATTACATTTTAAAAATTATTAAAAATTTAGTTTTTAACTAGTAAGCGAGGATAAAGATAGAGTCCAATTTTACATGTTAATCTTAGCAACAATTTAAATTGTAGTAAAAAGAAAATCCGTTGGCTTTATTGACCGTGAGGGTTCAAGTCCCTCTACCCCCAAAAAATATAGTTTTTTATTGACATAAACTTCCAGTTTATGTTAGGATAAACTAATAAAAAAAGCCGGAATAGCTCAGTTGGTAGAGCAGAGGACTGAAAATC
Locus: trnL-F
Nucleotides: 439 bp
Sequence Upload Date: 2019-09-20

Attribution

Specimen Depository: University of Alberta, Cryptogamic Herbarium
Sequencing Center: Centre for Biodiversity Genomics
Photography: Masha L. Kuzmina
Collectors: K. Beechey, M. Pinto
Specimen Identification: Catherine La Farge

Identifiers

Process ID: BRALT193-18 Sample ID: CCDB-25693-F01
Record Created: 2018-01-31 Museum ID: 111654
Collection Code: ALTA Field ID: 7467
Deposited In: University of Alberta, Cryptogamic Herbarium
Associated Datasets: DS-BITSR | Verified ITS2 reference library for the bryophytes of Canada
Specimen Linkout:
Checksum: ccb4f6c083f5fd70349f58ad33e68ea3

Taxonomy

Kingdom: Plantae Subfamily:
Phylum: Bryophyta Tribe:
Class: Bryopsida Genus: Fontinalis
Order: Hypnales Species: Fontinalis hypnoides
Family: Fontinalaceae Scientific Name Authorship:
BIN ID: Subspecies:
Identification Method: Morphology
Taxonomy Notes: The lack of keeled leaves was one indication of misidentification
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: Canada (CA) Collection Date Start: 2012-06-26
Province/State: Alberta Collection Date End:
Region/County: Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Redwater Elevation:
Habitat: Submerged in stream Elevation Accuracy:
Latitude: Depth:
Longitude: Depth Accuracy:
Sampling Protocol:
Collectors: K. Beechey, M. Pinto
Collection Note:

Ecology

Realm:
Biome:
Ecoregion:

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/BRALT193-18
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ABRALT193-18&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ABRALT193-18&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsXIKcvQJMbQ01jW0sM7JzM0sSU0BAMaKC0w=?length=3

AJAX URLs


                

            

        

    






    


    

        

            

                
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