Specimen Images



Collection Site(s)



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Sequence: ITS2

Sequence ID: BRYCA1541-16.ITS2 GenBank Accession:
Primers Forward: ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) Primers Reverse: ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnLUAAd (GGGGATAGAGGGACTTGAAC)
Sequence Run Site: Centre for Biodiversity Genomics
TCTTGGCTCTTGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCCGCGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCTTGTCCAAGGGCATTTCCGCTAGAGCGTCACCGCGCCCCCCACCGATCCACTCTCGCCGCGAGGCGACAGTCGGGTCGAGTGAAAGTGGCCGTCCCGGTTTGCTGAGTGGTGGTCTTCGCGAGAAGGCCGCCATCCTTGGAAGGGTCGGCTGAAATGGATGGAATTGGGCCGCCGTGGTGACACAGTCCGCGATCGGGTGATTTCGTCGCGAGCCTCCTCCGGGAGGGTCGCCGTGAATTTTTCTAAGTGCGAGTCTGCGTCCCCCAGTTGGCTTTTTGGTTCCCTCATGCAGGTCGAGCGCGCCCCCCGCGGCGCGCGTCACGCATCAGACCTCTAATCGGAAAAGACTACCCGCTGAATTTAA
Locus: ITS2
Nucleotides: 470 bp
Sequence Upload Date: 2024-06-10

Sequence: rbcLa

Sequence ID: BRYCA1541-16.rbcLa GenBank Accession:
Primers Forward: ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) Primers Reverse: ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnLUAAd (GGGGATAGAGGGACTTGAAC)
Sequence Run Site: Centre for Biodiversity Genomics
AAGTGCTGGATTTAAAGCTGGTGTTAAAGATTACAGATTAACTTATTACACTCCAGATTATCAGACTAAAGAAACTGATATTTTAGCAGCATTTCGAATGACTCCTCAACCGGGAGTACCCGCTGAAGAGGCAGGAGCTGCAGTAGCTGCGGAATCTTCCACTGGTACATGGACCACCGTTTGGACCGATGGACTTACCAGTCTTGATCGTTATAAAGGACGATGCTATGATCTTGAAGCAGTTCCTGGAGAAGAGAATCAATATATTGCTTATGTTGCTTACCCATTAGATCTATTTGAAGAAGGTTCTGTTACCAATTTATTTACTTCTATTGTTGGTAATGTTTTTGGATTTAAAGCTTTACGAGCTTTACGTCTAGAAGATTTACGTATTCCTCCAGCTTATTCCAAAACTTTCCAAGGCCCACCTCATGGTATTCAAGTTGAAAGAGATAAATTAAACAAATATGGTCGTCCATTATTAGGATGTACTATCAAGCCAAAATTGGGTTTATCTGCTAAAAACTATGGTAGAGCTGTATATGAATGTCTT
Locus: rbcLa
Nucleotides: 553 bp
Sequence Upload Date: 2019-09-20

Sequence: trnL-F

Sequence ID: BRYCA1541-16.trnL-F GenBank Accession:
Primers Forward: ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) Primers Reverse: ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnLUAAd (GGGGATAGAGGGACTTGAAC)
Sequence Run Site: Centre for Biodiversity Genomics
GACTTANATAATTTGAGCGTTAGTAGAAAAACTTACTAGATGCTAGCTTTCAGATTCAGGGAAACTTAGGTTGATAAAAATATAAGCAATCCTGAGCCAAATATTATTTCGTTTGAAAATGAAATAGGTGCAGAGACTCAATGGAAGCTATCCTAACGAATAATATTTTTAAAATTATCTAAAATTTATTTTTTAGATATTAAGCGAGGATAAAGATAGAGTCCAATTTTACATGTTAATCTTAGCAACAATTTAAATTGTAGTAGAAAGAAAATCCGTTGGCTTTATTGACCGTGAGG
Locus: trnL-F
Nucleotides: 299 bp
Sequence Upload Date: 2019-09-20

Attribution

Specimen Depository: Canadian Museum of Nature, Natural Heritage Collection
Sequencing Center: Centre for Biodiversity Genomics
Photography: CBG Photography Group
Collectors: W.B. Schofield
Specimen Identification:

Identifiers

Process ID: BRYCA1541-16 Sample ID: CCDB-28094-B10
Record Created: 2016-02-24 Museum ID: 253525
Collection Code: CANM Field ID: 60262
Deposited In: Canadian Museum of Nature, Natural Heritage Collection
Associated Datasets: DS-BITSR | Verified ITS2 reference library for the bryophytes of Canada
Specimen Linkout:
Checksum: c6ed6705cfcc014662919b372ffc7704

Taxonomy

Kingdom: Plantae Subfamily:
Phylum: Bryophyta Tribe:
Class: Bryopsida Genus: Homalothecium
Order: Hypnales Species: Homalothecium aureum
Family: Brachytheciaceae Scientific Name Authorship:
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes: Taxonomy updated by Jennifer Doubt 2016
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: Canada (CA) Collection Date Start: 1976-04-22
Province/State: British Columbia Collection Date End:
Region/County: Coord. Source:
Sector: Coord. Accuracy:
Exact Site: East of Extension, White River Road, Vancouver Island Elevation:
Habitat: common among grasses on outcrop slope Elevation Accuracy:
Latitude: 49.1 Depth:
Longitude: -123.933 Depth Accuracy:
Sampling Protocol:
Collectors: W.B. Schofield
Collection Note:

Ecology

Realm: Nearctic
Biome:
Ecoregion: Puget_lowland_forests

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/BRYCA1541-16
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ABRYCA1541-16&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ABRYCA1541-16&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsXIKinR2NDQ1MdQ1NLPOyczNLElNAQDQEwt0?length=3

AJAX URLs


                

            

        

    






    


    

        

            

                
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