Sequence: ITS2
| Sequence ID: | BRYCA436-16.ITS2 | GenBank Accession: | |
|---|---|---|---|
| Primers Forward: | ITS-3p62plF1 (ACBTRGTGTGAATTGCAGRATC) ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) | Primers Reverse: | ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) ITS-p4R2 (CCGCTTAKTKATATGCTTAAA) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnLUAAd (GGGGATAGAGGGACTTGAAC) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| TCTTGGCTCTTGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCCGCGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCTTGACCAAGGGCATCTCTGCCAGAGCGTCACCGCGACACCCACCAATCCACTCTAAGTGGATTGTGTGAAACTGGCCATCCGAATGTGGCCACCCGGGGGGGAACTTCCTTCCTGGGTGGCAGATTGGGTTGGCTGAAATGGAGGGAATTTGGCCGCCGTGGTGACACAGCCCGCGATCAGGTGATCCAGGTGTTCAAAAACCTGGAACTCAAACGTGCGCGTTGGTTGTGGCACCCAGACCCGAACTCCAAAGCAGGTTCCTACCGACACTTCGGCCTAAAAAGCCGGACAATGGAGGAAGGAAAAACGTCACGCATCAGACCTCTGATCAGAGAAGACTACCCGCTGAGTTTAA | |||
| Locus: | ITS2 | ||
| Nucleotides: | 461 bp | ||
| Sequence Upload Date: | 2024-12-19 | ||
Sequence: rbcLa
| Sequence ID: | BRYCA436-16.rbcLa | GenBank Accession: | |
|---|---|---|---|
| Primers Forward: | ITS-3p62plF1 (ACBTRGTGTGAATTGCAGRATC) ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) | Primers Reverse: | ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) ITS-p4R2 (CCGCTTAKTKATATGCTTAAA) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnLUAAd (GGGGATAGAGGGACTTGAAC) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| AAGTGTTGGATTTAAAGCTGGTGTTAAAGATTACAGATTAAATTATTACACTCCAGATTATCAGACTTCAGCCACTGATATTTTAGCAGCATTTCGAATGACTCCTCAACCTGGGGTACCACCTGAAGAAGCAGGGGCTGCAGTTGCTGCGGAATCTTCCACTGGTACATGGACTACAGTTTGGACTGATGGACTTACTAGTCTTGATCGTTATAAAGGTCGATGCTATGATATCGAAGCAGTTCCTGGAGAAGAAAATCAATATATCGCTTATGTTGCTTACCCATTAGACTTATTTGAAGAAGGTTCTGTTACTAATTTATTTACTTCTATTGTTGGTAATGTTTTTGGATTTAAAGCTTTACGAGCTTTGCGTCTAGAAGATTTGCGTATTCCTCCATCTTATACCAAAACTTTCCAAGGCCCACCTCATGGTATTCAAGTTGAAAGAGACAAATTAAACAAATATGGTCGCCCATTATTGGGATGTACTATTAAACCAAAATTAGGTTTATCTGCTAAAAACTACGGTAGAGCTGTTTATGAATGTCTT | |||
| Locus: | rbcLa | ||
| Nucleotides: | 553 bp | ||
| Sequence Upload Date: | 2019-09-20 | ||
Sequence: trnL-F
| Sequence ID: | BRYCA436-16.trnL-F | GenBank Accession: | |
|---|---|---|---|
| Primers Forward: | ITS-3p62plF1 (ACBTRGTGTGAATTGCAGRATC) ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) | Primers Reverse: | ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) ITS-p4R2 (CCGCTTAKTKATATGCTTAAA) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnLUAAd (GGGGATAGAGGGACTTGAAC) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| GACTTAAATAATTTGAGCTTTGATAGAAAAACTTATTAAATGCTAGCTTTCAGATTCAGGGAAACTTAGGTTGAAAAAAGTATAAGCGATCCTGAGCCAAATTTTACATTTAAAAAACAAAATAGGTGCAGAGACTCGATGGAAGCTATCCTAACGCAAAAAGATTTAAGAGTTATTTAATGGAAATTTTTTGATTTAATAAAAGAAAAAAATTTCATTAAAATTTTTTAATTTACAAGCGAGGATAAAGATAGAGTCCAATTTTACATGTTAATTTTAACAACAATTTAAATTGTAGTAAAAAGAAAATCCGTTGGCTTTATTGACCGTGAGG | |||
| Locus: | trnL-F | ||
| Nucleotides: | 334 bp | ||
| Sequence Upload Date: | 2019-09-20 | ||
Attribution
| Specimen Depository: | Canadian Museum of Nature, Natural Heritage Collection |
|---|---|
| Sequencing Center: | Centre for Biodiversity Genomics |
| Photography: | CBG Photography Group |
| Collectors: | M.I. Moore |
| Specimen Identification: | M. I. Moore |
Identifiers
| Process ID: | BRYCA436-16 | Sample ID: | CCDB-28011-E09 | |||
|---|---|---|---|---|---|---|
| Record Created: | 2016-02-24 | Museum ID: | 328262 | |||
| Collection Code: | CANM | Field ID: | 6664 | |||
| Deposited In: | Canadian Museum of Nature, Natural Heritage Collection | |||||
| Associated Datasets: | DS-BITSR | Verified ITS2 reference library for the bryophytes of Canada | |||||
| Specimen Linkout: | ||||||
| Checksum: | 8f5abde797e9a6c27adbfbcd00c1eec6 | |||||
Taxonomy
Specimen
| Voucher Status: | Reproduction: | ||
|---|---|---|---|
| Tissue Descriptor: | Sex: | ||
| Brief Note: | Life Stage: | ||
| Detailed Notes: | |||
Collection
| Country/Ocean: | Canada (CA) | Collection Date Start: | 1977-10-16 |
|---|---|---|---|
| Province/State: | Ontario | Collection Date End: | |
| Region/County: | Coord. Source: | ||
| Sector: | Coord. Accuracy: | ||
| Exact Site: | North side of highway 17, west of Colton Lake, Rolphton. | Elevation: | |
| Habitat: | rock and earth slope. Exposed | Elevation Accuracy: | |
| Latitude: | Depth: | ||
| Longitude: | Depth Accuracy: | ||
| Sampling Protocol: | |||
| Collectors: | M.I. Moore | ||
| Collection Note: | |||
Ecology
| Realm: | |
|---|---|
| Biome: | |
| Ecoregion: |
Publications
Electropherogram Trace Files
Under development - available shortly
Controller URLs
http://portal.boldsystems.org/record/BRYCA436-16 http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ABRYCA436-16&fields=marker_code http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ABRYCA436-16&extent=limited http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsXIKinR2NDE20zU0s87JzM0sSU0BAMZjC0Y=?length=3