Specimen Images



Collection Site(s)



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Sequence: ITS2

Sequence ID: BRYCA618-16.ITS2 GenBank Accession:
Primers Forward: ITS-3p62plF1 (ACBTRGTGTGAATTGCAGRATC) ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) Primers Reverse: ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) ITS-p4R2 (CCGCTTAKTKATATGCTTAAA) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnLUAAd (GGGGATAGAGGGACTTGAAC)
Sequence Run Site: Centre for Biodiversity Genomics
AGAATTCCGCGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCTTGACCGAGGGCATTTCTGCCAGAGCGTCACCGCGACACCCACCAAAACACACTTGAGAGTGCGTTTTGAGTGAAAGTGGCCATCCGAATGGGGCCGCCGGCGCCCGGGAGTTCTCCTCCTTGGGCGGCGGCAGCAGATTGGGTTGGCTGAAATGGAGGGAATCCTTCGGCCGCCGTGGCGACACGGCCCGCGATCAGGTGGTCCAGTTGCAAAGCTGGAACTCAAACGTGCGTCGGTCGTGGCGCCCAGTCGGCCGGATTCACAAGCAGNTCCCTACCGACACCCCGCCCCAGAAAGGCGGGGTGACGGGAGGCTTACGTCACGCATCAGACCTCTGATCAGAAAAGACTACCCCG
Locus: ITS2
Nucleotides: 405 bp
Sequence Upload Date: 2025-03-06

Sequence: rbcLa

Sequence ID: BRYCA618-16.rbcLa GenBank Accession:
Primers Forward: ITS-3p62plF1 (ACBTRGTGTGAATTGCAGRATC) ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) Primers Reverse: ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) ITS-p4R2 (CCGCTTAKTKATATGCTTAAA) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnLUAAd (GGGGATAGAGGGACTTGAAC)
Sequence Run Site: Centre for Biodiversity Genomics
AGGTGTTGGATTTAAAGCTGGTGTTAAAGATTACAGACTAACTTATTACACTCCAGATTATCAAACTAAAGATACTGATATTTTAGCAGCATTTCGAATGACTCCTCAACCAGGGGTACCACCTGAAGAAGCAGGAGCTGCAGTAGCTGCGGAATCTTCTACTGGTACATGGACTACGGTTTGGACTGATGGACTTACTAGTCTTGATCGTTATAAAGGTCGATGCTATGATATCGAAGCAGTTCCTGGAGAAGAAAATCAATATATCGCTTATGTTGCTTACCCATTAGATTTATTTGAAGAAGGTTCTGTTACTAATTTATTTACTTCTATTGTTGGTAATGTTTTTGGATTTAAAGCTTTACGAGCTTTGCGTCTAGAAGATTTGCGTATTCCTCCAGCTTATTCCAAAACTTTCCAAGGCCCACCTCACGGTATTCAAGTTGAAAGAGACAAATTAAACAAATATGGTCGTCCATTATTAGGATGTACTATTAAACCAAAATTAGGTTTATCTGCTAAAAACTACGGTAGAGCTGTTTATGAATGTCTT
Locus: rbcLa
Nucleotides: 553 bp
Sequence Upload Date: 2019-09-20

Sequence: trnL-F

Sequence ID: BRYCA618-16.trnL-F GenBank Accession:
Primers Forward: ITS-3p62plF1 (ACBTRGTGTGAATTGCAGRATC) ITS-BRY3d (CAACTCTCARCAACGGATA) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) trnLUAAc (CGAAATCGGTAGACGCTACG) Primers Reverse: ITS-BRY4d (CTTAKTGATATGCTTAAAYTC) ITS-p4R2 (CCGCTTAKTKATATGCTTAAA) rbcLa-R (GTAAAATCAAGTCCACCRCG) trnLUAAd (GGGGATAGAGGGACTTGAAC)
Sequence Run Site: Centre for Biodiversity Genomics
GACTTAAATAATTTGAGCTTTAGTAGAAAAACTTACTAAATGCTAGCTTTCAGAGTCAGGGAATCTTAGGTTGAAAAAAAAATATAAGCAATCCTGAGCCAAATTTTCCTTTTAAAAAACAAAATAGGTGCAGAGACTCGATGGAAGCTATCCTAACCCGTGTAAATTAAATCAAAAAAGGAAATTTTTTGATTTAATTTACACGGGAGGATAAAGATAGAGTCCAATTTTACATGTTAATTTTAACAACAATTTAAATTGTAGTAAAAAGAAAATCCGTTGGCTTTATTGACCGTGAGG
Locus: trnL-F
Nucleotides: 300 bp
Sequence Upload Date: 2019-09-20

Attribution

Specimen Depository: Canadian Museum of Nature, Natural Heritage Collection
Sequencing Center: Centre for Biodiversity Genomics
Photography: CBG Photography Group
Collectors: R.J. Belland
Specimen Identification:

Identifiers

Process ID: BRYCA618-16 Sample ID: CCDB-28013-E01
Record Created: 2016-02-24 Museum ID: 325665
Collection Code: CANM Field ID: 12503
Deposited In: Canadian Museum of Nature, Natural Heritage Collection
Associated Datasets: DS-BITSR | Verified ITS2 reference library for the bryophytes of Canada
Specimen Linkout:
Checksum: 76d567340095a79c14ce59168cba50e7

Taxonomy

Kingdom: Plantae Subfamily:
Phylum: Bryophyta Tribe:
Class: Bryopsida Genus: Aloina
Order: Pottiales Species: Aloina rigida
Family: Pottiaceae Scientific Name Authorship:
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes:
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes: Acc#: B130595

Collection

Country/Ocean: Canada (CA) Collection Date Start: 1989-06-21
Province/State: Quebec Collection Date End:
Region/County: Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Mingan Archipelago National Park Reserve: Ile Saint-Charles, on East side of Havre Saint- Charles Elevation:
Habitat: exposed moist mineral soil; cfr. Forested calcareous (limestone) cliffs Elevation Accuracy:
Latitude: 50.2 Depth:
Longitude: -63.317 Depth Accuracy:
Sampling Protocol:
Collectors: R.J. Belland
Collection Note:

Ecology

Realm: Nearctic
Biome:
Ecoregion:

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/BRYCA618-16
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ABRYCA618-16&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ABRYCA618-16&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsXIKinR2NDO00DU0s87JzM0sSU0BAMZ9C0g=?length=3

AJAX URLs


                

            

        

    






    


    

        

            

                
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