Specimen Images



Sequence: ITS2

Sequence ID: CHARA129-13.ITS2 GenBank Accession:
Primers Forward: Chara_ITSF2 (CCCCCTTCGATTTTGAAGTT) Chara_matKF2 (GAACGAATCCGTGATAAAAGC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: Chara_ITSR2 (ACATCCCCGATTGCCAAC) Chara_matKR2 (CTTCGGCCTTTCAAAAAGAA) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
GGGTGGAGTCCGTGGTTGTGGCTTCCCTCGCTCCCTACTTGGAGNGcGTCGATAGCCTAAAGGTGAAGGGAAACGGACGACATTCCGAGCGGGCCTGCACGGCTGCAACCCAGAGTGGGGCGTTTCGCCCCCCCCTGTTGTTGCCCTGCGGCACCCGCCCGTGGGTGGNGGTCTTCGTTTCGTGTAAaaa-cgNcaCTCTCGTCcCTCTCTCGGGCTTGTGCACTCGCCGCTCTGCNttGTCTCCCGTCGGTTTAAGACGG
Locus: ITS2
Nucleotides: 261 bp
Sequence Upload Date: 2014-01-24

Sequence: matK

Sequence ID: CHARA129-13.matK GenBank Accession:
Primers Forward: Chara_ITSF2 (CCCCCTTCGATTTTGAAGTT) Chara_matKF2 (GAACGAATCCGTGATAAAAGC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: Chara_ITSR2 (ACATCCCCGATTGCCAAC) Chara_matKR2 (CTTCGGCCTTTCAAAAAGAA) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
AAAAGCTTTCTTCATTTACTAAAAAACATATTGTATTTTACAAAAGAATTTTTGATTGAAGAATTCTATTGTGAAAAATTCCATTTGATTGAGTTGTCAATGTTTTTCAGAAATTTATATATAAATGAATTTGACTCTTTTATCGTTTATCATATCGTTAAAACATGGAAATTAGCCTATTTGTTGAATCCAAGTAAGACTATAGATGATTTTTCTTTCATACAAAAAAATGACATTTTGCTTAATATAAAAAGAAAACAGAAACGTTTTCCTTTGGTGTGTTGGTTGGCTAACAAATCTTTCTATTCTCTGTATGGAAATATACACTATGTACGTCGTGACCTTTCTTTTTTGATGGCTATTCAAGCAGGAAAAAATATTTCTCGCTTTTGGAAGTATAATTGTATAAAATTTCTCCAACTGAAGTTAGGATTTCCTTGTTCTTTAGATGTTTTATACTTAAAATCTCTTTTCAATCAAGATTTTTTGTTTTTAGGTTATAGAATTGTCAATAAATTGTGGAAAAAAAACTTCAAGAtAAGAGCGGTTTCTTGGTATTCGCCTA
Locus: matK
Nucleotides: 565 bp
Sequence Upload Date: 2014-01-24

Sequence: rbcLa

Sequence ID: CHARA129-13.rbcLa GenBank Accession:
Primers Forward: Chara_ITSF2 (CCCCCTTCGATTTTGAAGTT) Chara_matKF2 (GAACGAATCCGTGATAAAAGC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: Chara_ITSR2 (ACATCCCCGATTGCCAAC) Chara_matKR2 (CTTCGGCCTTTCAAAAAGAA) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
AGTGCTGGATTTAAAGCAGGGGTAAAAGATTACAGATTAACTTACTATACTCCTGAGTATAAAACTAAAGATACTGACATTTTAGCTGCATTTCGTGTAACTCCACAACCTGGCGTTCCACCTGAAGAAGCAGGTGCTGCAGTAGCTGCAGAATCTTCTACTGGTACATGGACTACTGTTTGGACTGACGGATTAACTAGTTTGGACCGATACAAAGGAAGATGCTACGATATTGAACCTGTTGCTGGTGAAGAGAATCAGTTTATTGCATATGTTGCTTATCCTCTTGATTTATTTGAAGAAGGATCAGTAACAAATTTATTCACATCGATTGTAGGTAATGTATTTGGATTTAAAGCATTAAGGGCTTTACGTTTGGAAGATTTACGTATTCCTCCTGCTTATACAAAGACTTTTCAAGGGCCACCTCATGGTATTCAAGTTGAAAGAGATAAACTGAATAAATATGGACGACCATTATTGGGATGTACTATTAAACCCAAATTAGGTTTATCTGCTAAAAATTATGGTAGAGCTGTATATGAATGTCTT
Locus: rbcLa
Nucleotides: 552 bp
Sequence Upload Date: 2013-05-06

Attribution

Specimen Depository: Norwegian Institute for Water Research
Sequencing Center: Centre for Biodiversity Genomics
Photography: Therese Fosholt Moe
Collectors:
Specimen Identification: Ingeborg Soulie-Maersche

Identifiers

Process ID: CHARA129-13 Sample ID: CHARA_A_00069
Record Created: 2013-03-18 Museum ID:
Collection Code: Field ID: 48
Deposited In: Norwegian Institute for Water Research
Associated Datasets:
Specimen Linkout:
Checksum: 896b67ee93dc1c2d43a0ac38905ad454

Taxonomy

Kingdom: Plantae Subfamily:
Phylum: Charophyta Tribe:
Class: Charophyceae Genus: Chara
Order: Charales Species: Chara vulgaris
Family: Characeae Scientific Name Authorship:
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes: C. vulgaris var. vulgaris f. calveraensis according to Wood and Imahori (1965). Genetic results indicate this taxon is not related to C. vulgaris, but to C. hispida
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: Argentina (AR) Collection Date Start: 2012-11-01
Province/State: Collection Date End:
Region/County: Argentinien , Puente del Inca, Laguna Horcones, chilenische Grenze Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Elevation:
Habitat: Elevation Accuracy:
Latitude: Depth:
Longitude: Depth Accuracy:
Sampling Protocol:
Collectors:
Collection Note:

Ecology

Realm:
Biome:
Ecoregion:

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/CHARA129-13
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ACHARA129-13&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ACHARA129-13&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsXL2cAxyNDSy1DU0ts7JzM0sSU0BAMTsCzA=?length=3

AJAX URLs


                

            

        

    






    


    

        

            

                
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