Specimen Images

Object ID:caos-cloud.linode-us-east.25_140.3ff2e8b9-1dd5-4f0d-864d-5d6055f99357.jpg

Image Metadata
Batch:3527
File Name:FSHN/FSH.BIGC.02.20181016.1.0049.DNA+1554921538.jpg
Sample ID:FSH.BIGC.02.20181016.1.0049.DNA
Orientation:Lateral
License Holder:National Ecological Observatory Network
License Year:2017
License:CreativeCommons - Attribution
Institution:National Ecological Observatory Network
Photographer:National Ecological Observatory Network

Collection Site(s)

Sequence: COI-5P

Sequence ID: FSHN130-19.COI-5P GenBank Accession:
Primers Forward: VF2_t1 (TGTAAAACGACGGCCAGTCAACCAACCACAAAGACATTGGCAC, FishF2_t1:TGTAAAACGACGGCCAGTCGACTAATCATAAAGATATCGGCAC) Primers Reverse: FishR2_t1 (CAGGAAACAGCTATGACACTTCAGGGTGACCGAAGAATCAGAA, FR1d_t1:CAGGAAACAGCTATGACACCTCAGGGTGTCCGAARAAYCARAA)
Sequence Run Site: Centre for Biodiversity Genomics
CCTCTATTTAGTATTTGGTGCCTGAGCCGGGATAGTCGGCACCGCCCTAAGTCTCTTGATTCGGGCAGAACTCAGCCAACCCGGCGCCCTCCTAGGGGATGACCAGATTTATAACGTAATTGTTACAGCCCATGCCTTCGTAATAATTTTCTTTATAGTCATACCAATTATGATCGGCGGCTTTGGAAACTGATTAATCCCTCTCATAATCGGAGCCCCCGACATAGCATTCCCCCGAATGAATAACATAAGCTTCTGACTCCTCCCTCCGTCCTTTCTTCTCCTCCTAGCCTCGTCTGGAGTTGAAGCCGGCGCTGGCACAGGATGAACAGTCTACCCCCCTCTAGCCGGCAATCTTGCCCACGCAGGAGCTTCCGTTGACTTAACTATTTTCTCCCTCCATTTAGCTGGTATTTCCTCAATTTTGGGGGCCATTAATTTTATTACGACCATTATTAACATAAAACCCCCAGCCATCTCCCAATATCAAACTCCACTTTTTGTTTGGGCCGTGTTAGTCACCGCCGTCCTCTTATTACTCTCCCTCCCTGTTTTAGCAGCAGGCATTACTATGCTACTCACAGACCGAAATCTTAATACCACTTTCTTTGACCCGGCAGGCGGAGGGGATCCAATCTTATACCAACACCTC
Locus: COI-5P
Nucleotides: 652 bp
Sequence Upload Date: 2019-04-26

Attribution

Specimen Depository: NEON Biorepository at Arizona State University
Sequencing Center: Centre for Biodiversity Genomics
Photography: National Ecological Observatory Network
Collectors: National Ecological Observatory Network, United States
Specimen Identification: NEON Technician

Identifiers

Process ID: FSHN130-19 Sample ID: FSH.BIGC.02.20181016.1.0049.DNA
Record Created: 2019-04-04 Museum ID: NEON02YPN
Collection Code: NEON:FISC-DNA Field ID: FSH.BIGC.02.20181016.1.0049.DNA
Deposited In: NEON Biorepository at Arizona State University
Associated Datasets: DS-WSTROUT | Public trout data for use in the Analyzing Urban Biodiversity Workshop at IBOL 2019
Specimen Linkout:
Checksum: 8d7d15344aecdb64eba0000d595957d7

Taxonomy

Kingdom: Animalia Subfamily:
Phylum: Chordata Tribe:
Class: Genus:
Order: Species:
Family: Scientific Name Authorship:
BIN ID: BOLD:AAB3872 Subspecies:
Identification Method: Morphology
Taxonomy Notes:
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Vouchered:Registered Collection Reproduction: S
Tissue Descriptor: fin clip Sex:
Brief Note: Life Stage: juvenile
Detailed Notes:

Collection

Country/Ocean: United States (US) Collection Date Start: 2018-10-16
Province/State: California Collection Date End:
Region/County: Domain 17 Coord. Source: WGS84
Sector: Tuolumne Coord. Accuracy: 0.2
Exact Site: Upper Big Creek NEON Elevation: 2022.4
Habitat: Elevation Accuracy: 0.3
Latitude: 36.955 Depth:
Longitude: -119.025 Depth Accuracy:
Sampling Protocol: electrofisher
Collectors: National Ecological Observatory Network, United States
Collection Note:

Ecology

Realm: Nearctic
Biome:
Ecoregion: Sierra_Nevada_forests

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/FSHN130-19
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3AFSHN130-19&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3AFSHN130-19&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsXIL9vAzNDbQNbS0zsnMzSxJTQEAu3oK_g==?length=1

AJAX URLs

https://caos.boldsystems.org/api/objects/caos-cloud.linode-us-east.25_140.3ff2e8b9-1dd5-4f0d-864d-5d6055f99357.jpg?subunit=1024.jpg
https://portal.boldsystems.org/api/maps/eAHLTCm2KijKT04tLs5MsXIL9vAzNDbQNbS0zsnMzSxJTQEAu3oK_g==?offset=10

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