Collection Site(s)
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Sequence: COI-5P
| Sequence ID: | FSHN132-19.COI-5P | GenBank Accession: | |
|---|---|---|---|
| Primers Forward: | VF2_t1 (TGTAAAACGACGGCCAGTCAACCAACCACAAAGACATTGGCAC, FishF2_t1:TGTAAAACGACGGCCAGTCGACTAATCATAAAGATATCGGCAC) | Primers Reverse: | FishR2_t1 (CAGGAAACAGCTATGACACTTCAGGGTGACCGAAGAATCAGAA, FR1d_t1:CAGGAAACAGCTATGACACCTCAGGGTGTCCGAARAAYCARAA) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| CCTCTATTTAGTATTTGGTGCCTGAGCCGGGATAGTCGGCACCGCCCTAAGTCTCTTGATTCGGGCAGAACTCAGCCAACCCGGCGCCCTCCTAGGGGATGACCAGATTTATAACGTAATTGTTACAGCCCATGCCTTCGTAATAATTTTCTTTATAGTCATACCAATTATGATCGGCGGCTTTGGAAACTGATTAATCCCTCTCATAATCGGAGCCCCCGACATAGCATTCCCCCGAATGAATAACATAAGCTTCTGACTCCTCCCTCCGTCCTTTCTTCTCCTCCTAGCCTCGTCTGGAGTTGAAGCCGGCGCTGGCACAGGATGAACAGTCTACCCCCCTCTAGCCGGCAATCTTGCCCACGCAGGAGCTTCCGTTGACTTAACTATTTTCTCCCTCCATTTAGCTGGTATTTCCTCAATTTTGGGGGCCATTAATTTTATTACGACCATTATTAACATAAAACCCCCAGCCATCTCCCAATATCAAACTCCACTTTTTGTTTGGGCCGTGTTAGTCACCGCCGTCCTCTTATTACTCTCCCTCCCTGTTTTAGCAGCAGGCATTACTATGCTACTCACAGACCGAAATCTTAATACCACTTTCTTTGACCCGGCAGGCGGAGGGGATCCAATCTTATACCAACACCTC | |||
| Locus: | COI-5P | ||
| Nucleotides: | 652 bp | ||
| Sequence Upload Date: | 2019-04-26 | ||
Attribution
| Specimen Depository: | NEON Biorepository at Arizona State University |
|---|---|
| Sequencing Center: | Centre for Biodiversity Genomics |
| Photography: | National Ecological Observatory Network |
| Collectors: | National Ecological Observatory Network, United States |
| Specimen Identification: | NEON Technician |
Identifiers
| Process ID: | FSHN132-19 | Sample ID: | FSH.BIGC.03.20181016.1.0039.DNA | |||
|---|---|---|---|---|---|---|
| Record Created: | 2019-04-04 | Museum ID: | NEON02YPO | |||
| Collection Code: | NEON:FISC-DNA | Field ID: | FSH.BIGC.03.20181016.1.0039.DNA | |||
| Deposited In: | NEON Biorepository at Arizona State University | |||||
| Associated Datasets: | DS-WSTROUT | Public trout data for use in the Analyzing Urban Biodiversity Workshop at IBOL 2019 | |||||
| Specimen Linkout: | ||||||
| Checksum: | b08342588c9bc14bfe76e789bb8896c3 | |||||
Taxonomy
| Kingdom: | Animalia | Subfamily: | |
|---|---|---|---|
| Phylum: | Chordata | Tribe: | |
| Class: | Genus: | ||
| Order: | Species: | ||
| Family: | Scientific Name Authorship: | ||
| BIN ID: | BOLD:AAB3872 | Subspecies: | |
| Identification Method: | Morphology | ||
| Taxonomy Notes: | |||
| * Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings | |||
Specimen
| Voucher Status: | Vouchered:Registered Collection | Reproduction: | S |
|---|---|---|---|
| Tissue Descriptor: | fin clip | Sex: | |
| Brief Note: | Life Stage: | juvenile | |
| Detailed Notes: | |||
Collection
| Country/Ocean: | United States (US) | Collection Date Start: | 2018-10-16 |
|---|---|---|---|
| Province/State: | California | Collection Date End: | |
| Region/County: | Domain 17 | Coord. Source: | WGS84 |
| Sector: | Tuolumne | Coord. Accuracy: | 0.2 |
| Exact Site: | Upper Big Creek NEON | Elevation: | 2022.4 |
| Habitat: | Elevation Accuracy: | 0.3 | |
| Latitude: | 36.955 | Depth: | |
| Longitude: | -119.025 | Depth Accuracy: | |
| Sampling Protocol: | electrofisher | ||
| Collectors: | National Ecological Observatory Network, United States | ||
| Collection Note: | |||
Ecology
| Realm: | Nearctic |
|---|---|
| Biome: | |
| Ecoregion: | Sierra_Nevada_forests |
Publications
Electropherogram Trace Files
Under development - available shortly
Controller URLs
http://portal.boldsystems.org/record/FSHN132-19 http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3AFSHN132-19&fields=marker_code http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3AFSHN132-19&extent=limited http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsXIL9vAzNDbSNbS0zsnMzSxJTQEAu5ILAA==?length=1