Collection Site(s)



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Sequence: 5-8S

Sequence ID: ITSIM029-15.5-8S GenBank Accession:
Primers Forward: Primers Reverse:
Sequence Run Site: Centre for Biodiversity Genomics, Informatics Department
CAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTT
Locus: 5-8S
Nucleotides: 158 bp
Sequence Upload Date: 2015-07-09

Sequence: ITS

Sequence ID: ITSIM029-15.ITS GenBank Accession: AJ853759
Primers Forward: Primers Reverse:
Sequence Run Site: Centre for Biodiversity Genomics, Informatics Department
GATCATTACACAAATATGAAGGCGGGCTGGAACCTCTCGGGGTTACAGCCTTGCTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGACAAACATAAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTGTCTCTAGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAGCAAAGGTCTAGCATCCATTAAGCCTTTTTTTCAACTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA
Locus: ITS
Nucleotides: 528 bp
Sequence Upload Date: 2015-07-08

Sequence: ITS1

Sequence ID: ITSIM029-15.ITS1 GenBank Accession:
Primers Forward: Primers Reverse:
Sequence Run Site: Centre for Biodiversity Genomics, Informatics Department
GATCATTACACAAATATGAAGGCGGGCTGGAACCTCTCGGGGTTACAGCCTTGCTGAATTATTCACCCTTGTCTTTTGCGTACTTCTTGTTTCCTTGGTGGGTTCGCCCACCACTAGGACAAACATAAACCTTTTGTAATTGCAATCAGCGTCAGTAACAAATTAATAATTA
Locus: ITS1
Nucleotides: 172 bp
Sequence Upload Date: 2015-07-09

Sequence: ITS2

Sequence ID: ITSIM029-15.ITS2 GenBank Accession:
Primers Forward: Primers Reverse:
Sequence Run Site: Centre for Biodiversity Genomics, Informatics Department
GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTGTCTCTAGCTTTGCTGGAGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGTCGCACTCTCTATCAGCAAAGGTCTAGCATCCATTAAGCCTTTTTTTCAAC
Locus: ITS2
Nucleotides: 158 bp
Sequence Upload Date: 2015-07-09

Attribution

Specimen Depository: Sydney Medical School
Sequencing Center: Centre for Biodiversity Genomics, Informatics Department
Photography:
Collectors: Wieland Meyer
Specimen Identification:

Identifiers

Process ID: ITSIM029-15 Sample ID: MITS65
Record Created: 2015-07-07 Museum ID: WM 04.486
Collection Code: Field ID:
Deposited In: Sydney Medical School
Associated Datasets:
Specimen Linkout:
Checksum: f3c92a149cac78d277c108a4a322dc84

Taxonomy

Kingdom: Fungi Subfamily:
Phylum: Ascomycota Tribe:
Class: Dothideomycetes Genus: Alternaria
Order: Pleosporales Species: Alternaria alternata
Family: Pleosporaceae Scientific Name Authorship: (Fr.) Keissl. 1912
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes:
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: Australia (AU) Collection Date Start:
Province/State: Collection Date End:
Region/County: Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Elevation:
Habitat: Elevation Accuracy:
Latitude: -25.345 Depth:
Longitude: 131.036 Depth Accuracy:
Sampling Protocol:
Collectors: Wieland Meyer
Collection Note:

Ecology

Realm: Australasia
Biome:
Ecoregion: Great_Sandy-Tanami_desert

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/ITSIM029-15
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3AITSIM029-15&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3AITSIM029-15&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsfIMCfb0NTCy1DU0tc7JzM0sSU0BAMeQC1g=?length=4

AJAX URLs


                

            

        

    






    


    

        

            

                
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