Collection Site(s)
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Sequence: COI-5P
| Sequence ID: | MAMN2954-19.COI-5P | GenBank Accession: | |
|---|---|---|---|
| Primers Forward: | VF1_t1 (TGTAAAACGACGGCCAGTTCTCAACCAACCACAAAGACATTGG, VF1d_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCACAARGAYATYGG, VF1i_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCAIAAIGAIATIGG) | Primers Reverse: | VR1_t1 (CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCAAAGAATCA, VR1d_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCRAARAAYCA, VR1i_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGICCIAAIAAICA) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| ACCCTGTATTTATTATTCGGGGCCTGAGCAGGAATAGTAGGCACAGCCCTAAGTATTCTAATTCGAGCGGAACTGGGACAACCAGGTGCCCTATTAGGTGACGATCAGATTTACAATGTAATCGTAACTGCCCATGCATTTGTCATAATTTTCTTTATGGTAATACCAATAATAATTGGAGGCTTTGGTAATTGACTAGTACCTCTAATAATTGGAGCCCCAGATATAGCATTCCCACGTATGAATAATATAAGCTTTTGACTACTACCTCCCTCATTCCTCCTGCTACTAGCATCATCAATAGTAGAGGCTGGGGCAGGTACAGGTTGAACTGTATACCCACCCTTAGCTGGTAACTTAGCACACGCTGGGGCATCAGTAGATCTTACTATTTTTTCCCTCCACCTAGCAGGTGTTTCCTCAATTTTAGGAGCAATTAACTTTATTACAACCATTGTTAATATAAAACCACCAGCCATAACACAATACCAAACCCCACTATTCGTATGATCAGTACTTATTACAGCTGTACTACTACTCCTATCTCTACCAGTTCTAGCCGCAGGAATTACTATACTTTTAACTGACCGTAACTTAAATACAACCTTCTTTGACCCTGCTGGAGGCGGAGATCCAATCCTATATCAACACTTATTC | |||
| Locus: | COI-5P | ||
| Nucleotides: | 657 bp | ||
| Sequence Upload Date: | 2019-06-28 | ||
Attribution
| Specimen Depository: | NEON Biorepository at Arizona State University |
|---|---|
| Sequencing Center: | Centre for Biodiversity Genomics |
| Photography: | Laura D Steger |
| Collectors: | National Ecological Observatory Network, United States |
| Specimen Identification: | Laura Steger |
Identifiers
| Process ID: | MAMN2954-19 | Sample ID: | MLBS.20180719.R2311.E | |||
|---|---|---|---|---|---|---|
| Record Created: | 2019-04-18 | Museum ID: | MLBS.20180925.R2311.V | |||
| Collection Code: | NEON:MAMC-DNA | Field ID: | MLBS.20180719.R2311.E | |||
| Deposited In: | NEON Biorepository at Arizona State University | |||||
| Associated Datasets: | ||||||
| Specimen Linkout: | ||||||
| Checksum: | a4bdf948026d8f7abc0a9ebc19c11aab | |||||
Taxonomy
| Kingdom: | Animalia | Subfamily: | Neotominae |
|---|---|---|---|
| Phylum: | Chordata | Tribe: | |
| Class: | Mammalia | Genus: | Peromyscus |
| Order: | Rodentia | Species: | Peromyscus leucopus |
| Family: | Cricetidae | Scientific Name Authorship: | Rafinesque, 1818 |
| BIN ID: | BOLD:AAA3869 | Subspecies: | |
| Identification Method: | genetics | ||
| Taxonomy Notes: | Tessier, N., Noël, S. and Lapointe, F.J., 2004. A new method to discriminate the deer mouse (Peromyscus maniculatus) from the white-footed mouse (Peromyscus leucopus) using species-specific primers in multiplex PCR. Canadian Journal of Zoology, 82(11), pp.1832-1835. | ||
| * Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings | |||
Specimen
| Voucher Status: | Vouchered:Registered Collection | Reproduction: | S |
|---|---|---|---|
| Tissue Descriptor: | ear punch | Sex: | F |
| Brief Note: | Life Stage: | adult | |
| Detailed Notes: | specimen:http://data.neonscience.org/home | ||
Collection
| Country/Ocean: | United States (US) | Collection Date Start: | 2018-07-19 |
|---|---|---|---|
| Province/State: | Virginia | Collection Date End: | |
| Region/County: | Domain 07 | Coord. Source: | WGS84 |
| Sector: | Giles | Coord. Accuracy: | 45.19 |
| Exact Site: | Mountain Lake Biological Station NEON | Elevation: | 1176.27 |
| Habitat: | deciduousForest | Elevation Accuracy: | 0.24 |
| Latitude: | 37.376 | Depth: | |
| Longitude: | -80.518 | Depth Accuracy: | |
| Sampling Protocol: | ShermanLF | ||
| Collectors: | National Ecological Observatory Network, United States | ||
| Collection Note: | |||
Ecology
| Realm: | Nearctic |
|---|---|
| Biome: | |
| Ecoregion: | Appalachian-Blue_Ridge_forests |
Publications
Electropherogram Trace Files
Under development - available shortly
Controller URLs
http://portal.boldsystems.org/record/MAMN2954-19 http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3AMAMN2954-19&fields=marker_code http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3AMAMN2954-19&extent=limited http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsfJ19PUzsjQ10TW0tM7JzM0sSU0BAMVoCzg=?length=1