Collection Site(s)
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Sequence: COI-5P
| Sequence ID: | MAMN4332-19.COI-5P | GenBank Accession: | |
|---|---|---|---|
| Primers Forward: | VF1_t1 (TGTAAAACGACGGCCAGTTCTCAACCAACCACAAAGACATTGG, VF1d_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCACAARGAYATYGG, LepF1_t1:TGTAAAACGACGGCCAGTATTCAACCAATCATAAAGATATTGG, VF1i_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCAIAAIGAIATIGG) | Primers Reverse: | VR1_t1 (CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCAAAGAATCA, VR1d_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCRAARAAYCA, LepR1_t1:CAGGAAACAGCTATGACTAAACTTCTGGATGTCCAAAAAATCA, VR1i_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGICCIAAIAAICA) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| TGAGCAGGAATAGTAGGGACGGCCCTAAGCATCCTAATTCGAGCGGAGCTTGGTCAACCAGGCGCTCTATTAGGTGACGACCAAATTTACAACGTAGTCGTCACAGCCCACGCATTTGTCATAATTTTCTTCATAGTTATACCAATAATAATCGGGGGGTTCGGCAATTGACTAGTCCCACTAATAATTGGGGCCCCTGATATAGCGTTCCCACGAATAAACAATATAAGCTTCTGACTTCTACCCCCATCATTCCTTCTACTGTTAGCCTCATCTATAGTAGAAGCAGGGGCCGGAACAGGATGAACCGTTTACCCACCACTAGCCGGCAATTTAGCACACGCAGGAGCATCCGTAGACCTGACCATTTTTTCCCTACACCTAGCAGGAGTTTCATCAATTTTAGGCGCTATCAACTTCATTACCACTATTATTAACATAAAACCGCCAGCCATAACACAATACCAAACCCCCCTATTTGTATGATCAGTCCTTATTACCGCTGTACTCCTCCTCCTTTCCCTTCCAGTTTTAGCCGCAGGCATTACGATACTCCTAACAGATCGAAACCTAAACACTACATTCTTCGACCCAGCCGGAGGCGGTGACCCAATTTTATACCAACA | |||
| Locus: | COI-5P | ||
| Nucleotides: | 626 bp | ||
| Sequence Upload Date: | 2019-07-30 | ||
Attribution
| Specimen Depository: | NEON Biorepository at Arizona State University |
|---|---|
| Sequencing Center: | Centre for Biodiversity Genomics |
| Photography: | Laura D Steger |
| Collectors: | National Ecological Observatory Network, United States |
| Specimen Identification: | Laura Steger |
Identifiers
| Process ID: | MAMN4332-19 | Sample ID: | BONA.20180710.R3573.E | |||
|---|---|---|---|---|---|---|
| Record Created: | 2019-07-04 | Museum ID: | BONA.20180807.R3573.V | |||
| Collection Code: | NEON:MAMC-DNA | Field ID: | BONA.20180710.R3573.E | |||
| Deposited In: | NEON Biorepository at Arizona State University | |||||
| Associated Datasets: | ||||||
| Specimen Linkout: | http://mczbase.mcz.harvard.edu/guid/8 | |||||
| Checksum: | 9e05ccf09fc194819f40ccea0c925681 | |||||
Taxonomy
| Kingdom: | Animalia | Subfamily: | Arvicolinae |
|---|---|---|---|
| Phylum: | Chordata | Tribe: | |
| Class: | Mammalia | Genus: | Myodes |
| Order: | Rodentia | Species: | Myodes rutilus |
| Family: | Cricetidae | Scientific Name Authorship: | Pallas, 1779 |
| BIN ID: | BOLD:AAA1515 | Subspecies: | |
| Identification Method: | Morphology | ||
| Taxonomy Notes: | |||
| * Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings | |||
Specimen
| Voucher Status: | Vouchered:Registered Collection | Reproduction: | S |
|---|---|---|---|
| Tissue Descriptor: | ear punch | Sex: | F |
| Brief Note: | Life Stage: | Adult | |
| Detailed Notes: | Voucher measurements: totalLength: 140 mm, tailLength: 39 mm, hindfootLengthSU: 17 mm, hindfootLengthCU: 19 mm, earLength: 16 mm, weight: 27.3 g | ||
Collection
| Country/Ocean: | United States (US) | Collection Date Start: | 2018-07-10 |
|---|---|---|---|
| Province/State: | Alaska | Collection Date End: | |
| Region/County: | Domain 19 | Coord. Source: | WGS84 |
| Sector: | Fairbanks North Star Borough | Coord. Accuracy: | 45.21 |
| Exact Site: | Caribou-Poker Creeks Research Watershed NEON | Elevation: | 285.35 |
| Habitat: | deciduousForest | Elevation Accuracy: | 0.22 |
| Latitude: | 65.155 | Depth: | |
| Longitude: | -147.522 | Depth Accuracy: | |
| Sampling Protocol: | ShermanLF | ||
| Collectors: | National Ecological Observatory Network, United States | ||
| Collection Note: | |||
Ecology
| Realm: | Nearctic |
|---|---|
| Biome: | Boreal_Forest_Taiga_simplify-0.1_buffered-0.018, Tundra_simplify-0.001_buffered-0.018 |
| Ecoregion: | Interior_Yukon-Alaska_alpine_tundra |
Publications
Electropherogram Trace Files
Under development - available shortly
Controller URLs
http://portal.boldsystems.org/record/MAMN4332-19 http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3AMAMN4332-19&fields=marker_code http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3AMAMN4332-19&extent=limited http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsfJ19PUzMTY20jW0tM7JzM0sSU0BAMUACzA=?length=1