Collection Site(s)
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Sequence: COI-5P
| Sequence ID: | MAMN5185-20.COI-5P | GenBank Accession: | |
|---|---|---|---|
| Primers Forward: | VF1_t1 (TGTAAAACGACGGCCAGTTCTCAACCAACCACAAAGACATTGG, VF1d_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCACAARGAYATYGG, VF1i_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCAIAAIGAIATIGG) | Primers Reverse: | VR1_t1 (CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCAAAGAATCA, VR1d_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCRAARAAYCA, VR1i_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGICCIAAIAAICA) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| AGGAATAGTAGGGACAGCCCTAAGCATCCTAATTCGAGCAGAACTTGGACAGCCAGGCGCTCTATTAGGTGACGACCAGATTTATAACGTAGTCGTTACAGCCCACGCATTCGTCATAATTTTCTTCATAGTAATACCAATGATAATCGGCGGGTTCGGTAACTGATTAGTCCCACTAATAATTGGAGCCCCCGACATAGCATTCCCACGAATAAACAATATAAGCTTCTGACTCCTGCCCCCATCATTCCTTCTACTTTTAGCCTCATCTATAGTAGAAGCAGGGGCCGGAACAGGATGAACTGTTTACCCACCACTAGCCGGCAATTTAGCACACGCAGGAGCATCCGTAGACCTAACCATTTTTTCCCTACACCTAGCAGGAGTTTCATCAATTTTAGGCGCTATCAATTTCATTACTACCATTATCAATATAAAACCGCCAGCCATATCACAATATCAAACCCCCCTATTTGTGTGATCAGTCCTTATTACCGCCGTACTACTTCTCCTCTCCCTCCCAGTCCTAGCCGCAGGCATTACAATACTCTTAACCGACCGAAATCTAAATACTACATTCTTCGACC | |||
| Locus: | COI-5P | ||
| Nucleotides: | 587 bp | ||
| Sequence Upload Date: | 2020-05-29 | ||
Attribution
| Specimen Depository: | NEON Biorepository at Arizona State University |
|---|---|
| Sequencing Center: | Centre for Biodiversity Genomics |
| Photography: | |
| Collectors: | National Ecological Observatory Network, United States |
| Specimen Identification: | NEON Technician |
Identifiers
| Process ID: | MAMN5185-20 | Sample ID: | NIWO.20190703.NR5365.E | |||
|---|---|---|---|---|---|---|
| Record Created: | 2020-02-24 | Museum ID: | ||||
| Collection Code: | NEON:MAMC-DNA | Field ID: | NIWO.20190703.NR5365.E | |||
| Deposited In: | NEON Biorepository at Arizona State University | |||||
| Associated Datasets: | ||||||
| Specimen Linkout: | ||||||
| Checksum: | c1626ad9b5d51dae0912317d87831225 | |||||
Taxonomy
| Kingdom: | Animalia | Subfamily: | |
|---|---|---|---|
| Phylum: | Chordata | Tribe: | |
| Class: | Genus: | ||
| Order: | Species: | ||
| Family: | Scientific Name Authorship: | ||
| BIN ID: | BOLD:AAA3325 | Subspecies: | |
| Identification Method: | Morphology | ||
| Taxonomy Notes: | |||
| * Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings | |||
Specimen
| Voucher Status: | Vouchered:Registered Collection | Reproduction: | S |
|---|---|---|---|
| Tissue Descriptor: | ear punch | Sex: | M |
| Brief Note: | Life Stage: | adult | |
| Detailed Notes: | Fleas | ||
Collection
| Country/Ocean: | United States (US) | Collection Date Start: | 2019-07-03 |
|---|---|---|---|
| Province/State: | Colorado | Collection Date End: | |
| Region/County: | Domain 13 | Coord. Source: | WGS84 |
| Sector: | Boulder | Coord. Accuracy: | 45.24 |
| Exact Site: | Niwot Ridge NEON | Elevation: | 3037.81 |
| Habitat: | evergreenForest | Elevation Accuracy: | 0.61 |
| Latitude: | 40.039 | Depth: | |
| Longitude: | -105.547 | Depth Accuracy: | |
| Sampling Protocol: | ShermanLF | ||
| Collectors: | National Ecological Observatory Network, United States | ||
| Collection Note: | |||
Ecology
| Realm: | Nearctic |
|---|---|
| Biome: | Temperate_Conifer_Forest_simplify-0.001_buffered-0.018 |
| Ecoregion: | Colorado_Rockies_forests |
Publications
Electropherogram Trace Files
Under development - available shortly
Controller URLs
http://portal.boldsystems.org/record/MAMN5185-20 http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3AMAMN5185-20&fields=marker_code http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3AMAMN5185-20&extent=limited http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsfJ19PUzNbQw1TUysM7JzM0sSU0BAMURCy8=?length=1