Collection Site(s)
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Sequence: COI-5P
| Sequence ID: | MAMN6729-21.COI-5P | GenBank Accession: | |
|---|---|---|---|
| Primers Forward: | VF1_t1 (TGTAAAACGACGGCCAGTTCTCAACCAACCACAAAGACATTGG, VF1d_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCACAARGAYATYGG, LepF1_t1:TGTAAAACGACGGCCAGTATTCAACCAATCATAAAGATATTGG, VF1i_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCAIAAIGAIATIGG) | Primers Reverse: | VR1_t1 (CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCAAAGAATCA, VR1d_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCRAARAAYCA, LepR1_t1:CAGGAAACAGCTATGACTAAACTTCTGGATGTCCAAAAAATCA, VR1i_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGICCIAAIAAICA) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| ACCCTGTATTTATTATTCGGGGCCTGAGCAGGAATAGTAGGCACAGCCCTAAGTATTcTAaTTCGAGCGGAACTGGGACAACCAGGTGCCTTATTAGGTGACGATCAGATTTACAATGTAATTGTAACTGCCCAtGCATTTGTCATAATTTTCTTTATGGTAATACCAATAATAATTGGAGGCTTTGGTAATTGACTAGTACCTCTAATAATTGGAGCCCCAGATATAGCATTTCCACGTATGAATAATATAAGCTTTTGACTACTACCTCCCTCATTCCTCCTGCTACTAGCATCATCAATAGTAGAGGCTGGGGCAGGTACAGGTTGAACTGTATACCCACCCTTAGCTGGTAACTTAGCACACGCTGGGGCATCAGTAGATCTTACTATTTTTTCCCTCCACCTAGCAGGTGTTTCCTCAATTTTAGGAGCAATTAACTTTATTACAACCATTGTTAATATAAAACCACCAGCCATAACACAATACCAAACCCCACTATTCGTATGATCAGTACTTATTACAGCTGTACTACTACTCCTGTCTCTACCAGTTCTAGCCGCAGGAATTACTATACTTTTAACTGACCGTAACTTAAATACAACCTTCTTTGACCCTGCtGGAGGCGGAGATCCAATCCTATATCAACA | |||
| Locus: | COI-5P | ||
| Nucleotides: | 650 bp | ||
| Sequence Upload Date: | 2021-07-08 | ||
Attribution
| Specimen Depository: | NEON Biorepository at Arizona State University |
|---|---|
| Sequencing Center: | Centre for Biodiversity Genomics |
| Photography: | Rosie Liao |
| Collectors: | National Ecological Observatory Network, United States |
| Specimen Identification: | Laura Steger |
Identifiers
| Process ID: | MAMN6729-21 | Sample ID: | TREE.20200730.R6420.E | |||
|---|---|---|---|---|---|---|
| Record Created: | 2021-05-07 | Museum ID: | TREE.20200730.R6420.E | |||
| Collection Code: | NEON:MAMC-DNA | Field ID: | TREE.20200730.R6420.E | |||
| Deposited In: | NEON Biorepository at Arizona State University | |||||
| Associated Datasets: | ||||||
| Specimen Linkout: | ||||||
| Checksum: | a847de807a90c613386573e31207f441 | |||||
Taxonomy
| Kingdom: | Animalia | Subfamily: | Neotominae |
|---|---|---|---|
| Phylum: | Chordata | Tribe: | |
| Class: | Mammalia | Genus: | Peromyscus |
| Order: | Rodentia | Species: | Peromyscus leucopus |
| Family: | Cricetidae | Scientific Name Authorship: | Rafinesque, 1818 |
| BIN ID: | BOLD:AAA3869 | Subspecies: | |
| Identification Method: | Morphology and genetics | ||
| Taxonomy Notes: | ID References: Tessier, N., Noël, S. and Lapointe, F.J., 2004. A new method to discriminate the deer mouse (Peromyscus maniculatus) from the white-footed mouse (Peromyscus leucopus) using species-specific primers in multiplex PCR. Canadian Journal of Zoology, 82(11), pp.1832-1835. ID Remarks: PCR targeting the COIII mitochondrial gene of P. leucopus and P. maniculatus was executed according to Tessier et al. (2004). Successful amplification of DNA resulted in 159-bp fragment (P. leucopus). | ||
| * Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings | |||
Specimen
| Voucher Status: | Vouchered:Registered Collection | Reproduction: | S |
|---|---|---|---|
| Tissue Descriptor: | ear punch | Sex: | M |
| Brief Note: | Life Stage: | subadult | |
| Detailed Notes: | Measurements associated with voucher specimen: totalLength: 156 mm, tailLength: 74 mm, hindfootLengthSU: 20.5 mm, hindfootLengthCU: 21.5 mm, earLength: 14 mm, weight: 15.4 g, testisLength: 8.9 mm, testisWidth: 5.6 mm. | ||
Collection
| Country/Ocean: | United States (US) | Collection Date Start: | 2020-07-30 |
|---|---|---|---|
| Province/State: | Wisconsin | Collection Date End: | |
| Region/County: | Domain 05 | Coord. Source: | WGS84 |
| Sector: | Lincoln | Coord. Accuracy: | 45.22 |
| Exact Site: | Treehaven NEON | Elevation: | 482.42 |
| Habitat: | deciduousForest | Elevation Accuracy: | 0.3 |
| Latitude: | 45.49 | Depth: | |
| Longitude: | -89.553 | Depth Accuracy: | |
| Sampling Protocol: | ShermanLF | ||
| Collectors: | National Ecological Observatory Network, United States | ||
| Collection Note: | |||
Ecology
| Realm: | Nearctic |
|---|---|
| Biome: | Temperate_Broadleaf_&_Mixed_Forest_simplify-0.001_buffered-0.018 |
| Ecoregion: | Western_Great_Lakes_forests |
Publications
Electropherogram Trace Files
Under development - available shortly
Controller URLs
http://portal.boldsystems.org/record/MAMN6729-21 http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3AMAMN6729-21&fields=marker_code http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3AMAMN6729-21&extent=limited http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsfJ19PUzMzey1DUytM7JzM0sSU0BAMVfCzU=?length=1