Collection Site(s)
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Sequence: COI-5P
| Sequence ID: | MAMN8542-23.COI-5P | GenBank Accession: | |
|---|---|---|---|
| Primers Forward: | VF1_t1 (TGTAAAACGACGGCCAGTTCTCAACCAACCACAAAGACATTGG, VF1d_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCACAARGAYATYGG, LepF1_t1:TGTAAAACGACGGCCAGTATTCAACCAATCATAAAGATATTGG, VF1i_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCAIAAIGAIATIGG) | Primers Reverse: | VR1_t1 (CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCAAAGAATCA, VR1d_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCRAARAAYCA, LepR1_t1:CAGGAAACAGCTATGACTAAACTTCTGGATGTCCAAAAAATCA, VR1i_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGICCIAAIAAICA) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| ACCCTGTACCTGCTATTTGGGGCCTGAGCAGGTATAGTAGGTACAGCCCTTAGCATCCTTATCCGAGCAGAACTTGGCCAACCAGGTGCCCTATTAGGCGACGATCAAATCTACAACGTAGTAGTAACAGCCCACGCTTTCGTGATAATTTTCTTCATAGTTATGCCAATAATAATTGGCGGCTTCGGCAACTGGCTTGTCCCACTAATAATCGGAGCACCAGACATAGCATTTCCCCGAATAAATAATATGAGCTTTTGACTTCTACCACCATCATTCCTTCTACTACTGGCATCATCGATAGTAGAAGCCGGGGCTGGAACAGGCTGAACTGTCTACCCACCACTAGCCGGCAATTTAGCACATGCTGGAGCATCAGTTGACCTAACTATCTTTTCACTGCACTTAGCAGGTGTATCCTCTATCCTCGGAGCAATTAACTTCATTACTACTATTATTAATATGAAACCGCCAGCTATAACACAATATCAAACTCCATTATTCGTATGATCAGTACTAATCACCGCTGTACTTCTACTTCTTTCCCTCCCTGTTCTAGCCGCAGGAATTACAATGCTTCTCACAGACCGTAATCTAAATACCACTTTCTTCGACCCCGCTGGAGGAGGTGACCCTATCCTCTACCAACACCTATTT | |||
| Locus: | COI-5P | ||
| Nucleotides: | 657 bp | ||
| Sequence Upload Date: | 2024-01-23 | ||
Attribution
| Specimen Depository: | Arizona State University |
|---|---|
| Sequencing Center: | Centre for Biodiversity Genomics |
| Photography: | |
| Collectors: | National Ecological Observatory Network, United States |
| Specimen Identification: | NEON Technician |
Identifiers
| Process ID: | MAMN8542-23 | Sample ID: | KONZ.20220721.R6658.E | |||
|---|---|---|---|---|---|---|
| Record Created: | 2023-10-26 | Museum ID: | ||||
| Collection Code: | Field ID: | KONZ.20220721.R6658.E | ||||
| Deposited In: | Arizona State University | |||||
| Associated Datasets: | ||||||
| Specimen Linkout: | ||||||
| Checksum: | a874201f28ab8278f8f35a1028ae68ef | |||||
Taxonomy
| Kingdom: | Animalia | Subfamily: | Arvicolinae |
|---|---|---|---|
| Phylum: | Chordata | Tribe: | |
| Class: | Mammalia | Genus: | Microtus |
| Order: | Rodentia | Species: | Microtus pinetorum |
| Family: | Cricetidae | Scientific Name Authorship: | |
| BIN ID: | BOLD:ADY9216 | Subspecies: | |
| Identification Method: | Morphology | ||
| Taxonomy Notes: | |||
| * Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings | |||
Specimen
| Voucher Status: | Vouchered:Registered Collection | Reproduction: | S |
|---|---|---|---|
| Tissue Descriptor: | ear punch | Sex: | M |
| Brief Note: | Life Stage: | adult | |
| Detailed Notes: | |||
Collection
| Country/Ocean: | United States (US) | Collection Date Start: | |
|---|---|---|---|
| Province/State: | Kansas | Collection Date End: | |
| Region/County: | Prairie Peninsula Domain | Coord. Source: | WGS84 |
| Sector: | Riley | Coord. Accuracy: | 45.29 |
| Exact Site: | Konza Prairie Biological Station NEON | Elevation: | 347.26 |
| Habitat: | deciduousForest | Elevation Accuracy: | 0.14 |
| Latitude: | 39.102 | Depth: | |
| Longitude: | -96.585 | Depth Accuracy: | |
| Sampling Protocol: | ShermanLF | ||
| Collectors: | National Ecological Observatory Network, United States | ||
| Collection Note: | |||
Ecology
| Realm: | Nearctic |
|---|---|
| Biome: | Temperate_Grasslands_Savannas_&_Shurblands_simplify-0.001_buffered-0.018 |
| Ecoregion: | Flint_Hills_tallgrass_prairie |
Publications
Electropherogram Trace Files
Under development - available shortly
Controller URLs
http://portal.boldsystems.org/record/MAMN8542-23 http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3AMAMN8542-23&fields=marker_code http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3AMAMN8542-23&extent=limited http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsfJ19PWzMDUx0jUyts7JzM0sSU0BAMU5CzI=?length=1