Collection Site(s)
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Sequence: COI-5P
| Sequence ID: | MAMN8872-23.COI-5P | GenBank Accession: | |
|---|---|---|---|
| Primers Forward: | VF1_t1 (TGTAAAACGACGGCCAGTTCTCAACCAACCACAAAGACATTGG, VF1d_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCACAARGAYATYGG, LepF1_t1:TGTAAAACGACGGCCAGTATTCAACCAATCATAAAGATATTGG, VF1i_t1:TGTAAAACGACGGCCAGTTCTCAACCAACCAIAAIGAIATIGG) | Primers Reverse: | VR1_t1 (CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCAAAGAATCA, VR1d_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGGCCRAARAAYCA, LepR1_t1:CAGGAAACAGCTATGACTAAACTTCTGGATGTCCAAAAAATCA, VR1i_t1:CAGGAAACAGCTATGACTAGACTTCTGGGTGICCIAAIAAICA) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| ACCCTCTATCTACTATTTGGTGCTTGAGCAGGAATAGTTGGTACGGCCTTAAGCATCCTGATTCGAGCTGAACTTGGTCAACCCGGAGCCCTACTAGGTGATGATCAAATTTACAATGTAGTCGTAACTGCTCATGCATTCGTCATAATCTTTTTCATAGTTATACCAATGATAATCGGAGGATTTGGTAACTGACTGGTTCCTCTAATAATTGGGGCCCCAGACATAGCATTTCCACGAATAAACAATATAAGTTTTTGACTACTACCACCATCATTCCTTCTTCTACTGGCATCCTCTATAGTAGAAGCAGGAGCAGGTACAGGATGGACTGTATACCCACCACTAGCCGGTAATATAGCCCATGCTGGAGCCTCAGTAGACCTAACTATCTTCTCCCTACATTTAGCAGGAGTATCCTCAATTCTAGGGGCAATTAATTTTATTACAACTATTATCAACATGAAACCCCCAGCCATAACACAATACCAAACCCCACTATTCGTGTGATCTGTACTTATTACAGCAGTCCTCCTACTTCTATCTCTCCCAGTACTAGCAGCAGGCATTACAATGCTTTTAACTGACCGAAACCTAAATACAACTTTCTTTGACCCAGCTGGTGGAGGAGACCCAATTCTATATCAACATCTATT | |||
| Locus: | COI-5P | ||
| Nucleotides: | 656 bp | ||
| Sequence Upload Date: | 2023-12-08 | ||
Attribution
| Specimen Depository: | Arizona State University |
|---|---|
| Sequencing Center: | Centre for Biodiversity Genomics |
| Photography: | |
| Collectors: | National Ecological Observatory Network, United States |
| Specimen Identification: | NEON Technician |
Identifiers
| Process ID: | MAMN8872-23 | Sample ID: | SRER.20220407.R3936.E | |||
|---|---|---|---|---|---|---|
| Record Created: | 2023-10-26 | Museum ID: | ||||
| Collection Code: | Field ID: | SRER.20220407.R3936.E | ||||
| Deposited In: | Arizona State University | |||||
| Associated Datasets: | ||||||
| Specimen Linkout: | ||||||
| Checksum: | 52cd9004a9ef9486c1f41e880170cb8d | |||||
Taxonomy
| Kingdom: | Animalia | Subfamily: | Neotominae |
|---|---|---|---|
| Phylum: | Chordata | Tribe: | |
| Class: | Mammalia | Genus: | Neotoma |
| Order: | Rodentia | Species: | Neotoma albigula |
| Family: | Cricetidae | Scientific Name Authorship: | Hartley, 1894 |
| BIN ID: | BOLD:AAC2507 | Subspecies: | |
| Identification Method: | Morphology | ||
| Taxonomy Notes: | |||
| * Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings | |||
Specimen
| Voucher Status: | Vouchered:Registered Collection | Reproduction: | S |
|---|---|---|---|
| Tissue Descriptor: | ear punch | Sex: | F |
| Brief Note: | Life Stage: | adult | |
| Detailed Notes: | |||
Collection
| Country/Ocean: | United States (US) | Collection Date Start: | |
|---|---|---|---|
| Province/State: | Arizona | Collection Date End: | |
| Region/County: | Desert Southwest Domain | Coord. Source: | WGS84 |
| Sector: | Pima | Coord. Accuracy: | 45.1 |
| Exact Site: | Santa Rita Experimental Range NEON | Elevation: | 1243.68 |
| Habitat: | shrubScrub | Elevation Accuracy: | 0.1 |
| Latitude: | 31.829 | Depth: | |
| Longitude: | -110.826 | Depth Accuracy: | |
| Sampling Protocol: | ShermanXLK | ||
| Collectors: | National Ecological Observatory Network, United States | ||
| Collection Note: | |||
Ecology
| Realm: | Nearctic |
|---|---|
| Biome: | Deserts_&_Xeric_Shrublands_simplify-0.001_buffered-0.018 |
| Ecoregion: | Chihuahuan_desert |
Publications
Electropherogram Trace Files
Under development - available shortly
Controller URLs
http://portal.boldsystems.org/record/MAMN8872-23 http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3AMAMN8872-23&fields=marker_code http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3AMAMN8872-23&extent=limited http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsfJ19PWzsDA30jUyts7JzM0sSU0BAMWKCzg=?length=1