Specimen Images



Collection Site(s)



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Sequence: ITS2

Sequence ID: NNOR584-13.ITS2 GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
TGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGT-----CCC------------------CCCATCCTCTCGAGG---AT---------ATGG-G-ACGGAAGCTGATCTCCCGTG-----TGTTACCGCACGCGGTTGGCCAAAATCCGA-GCTAAGGACGTCAGGAGCGTCTTGACATGCGGTGGTGAATTTAATT--CTCG---------TCATATAGTCAGACG---------------------TTCCGGTCCAAA-----AG--CTCTTGA-TGACCCAAAGT------------------------------------------CCTCAAC----GCGACCCCAG------GTCAGGCGG-----------GATCACCCGCTGAGTTTAA
Locus: ITS2
Nucleotides: 458 bp
Sequence Upload Date: 2013-03-22

Sequence: rbcL-like

Sequence ID: NNOR584-13.rbcL-like GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
AGTGTTGGATTCAAAGCTGGTGTTAAAAAGAGTATAAATTGACTTATTATACTCCTGAATATGAAACCAAGGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCCGGAGTTCCACCTGAAGAAGCAGGGGCTGCGGTAGCTGCTGAATCTTCTATTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGCCTTGATCGTTACAAAGGACGATGCTACCACATCGAGCCCGTTCCAGGAGAAGAAAATCAATTTATTGCTTATGTAGCTTACCCTTTAGACCTTTTTGAAGAAGGTTCGGTTACTAACATGTTTACTTCGATTGTGGGTAATGTATTTGGGTTCAAAGCCCTGGCTGCTCTACGTCTAGAGGATCTGCGAATCCCTCCTGCTTATACTCAAACTTTCCAGGGACCACCTCATGGTATCCAAGTTGAAAGAGAGAAATTGAACAAGTATGGACGTCCCCTATTAGGATGTACTATTAAACCTAAATTGGGGTTATCCGCGAAGAACTGTGGTAGAGCAGTTTATGAATGTCTA
Locus: rbcL-like
Nucleotides: 554 bp
Sequence Upload Date: 2013-03-20

Sequence: rbcLa

Sequence ID: NNOR584-13.rbcLa GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
AGTGTTGGATTCAAAGCTGGTGTTAAAGAGTATAAATTGACTTATTATACTCCTGAATATGAAACCAAGGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCCGGAGTTCCACCTGAAGAAGCAGGGGCTGCGGTAGCTGCTGAATCTTCTATTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGCCTTGATCGTTACAAAGGACGATGCTACCACATCGAGCCCGTTCCAGGAGAAGAAAATCAATTTATTGCTTATGTAGCTTACCCTTTAGACCTTTTTGAAGAAGGTTCGGTTACTAACATGTTTACTTCGATTGTGGGTAATGTATTTGGGTTCAAAGCCCTGGCTGCTCTACGTCTAGAGGATCTGCGAATCCCTCCTGCTTATACTCAAACTTTCCAGGGACCACCTCATGGTATCCAAGTTGAAAGAGAGAAATTGAACAAGTATGGACGTCCCCTATTAGGATGTACTATTAAACCTAAATTGGGGTTATCCGCGAAGAACTGTGGTAGAGCAGTTTATGAATGTCTA
Locus: rbcLa
Nucleotides: 552 bp
Sequence Upload Date: 2013-03-12

Attribution

Specimen Depository: Tromso University Museum
Sequencing Center: Centre for Biodiversity Genomics
Photography: Sarah Lovibond
Collectors: Kristian Lanes
Specimen Identification: Kristian Lanes

Identifiers

Process ID: NNOR584-13 Sample ID: SEL_0299
Record Created: 2013-01-17 Museum ID: TROM-V-170096
Collection Code: V Field ID:
Deposited In: Tromso University Museum
Associated Datasets:
Specimen Linkout:
Checksum: 5e93823abbff55354a149eed472b94f3

Taxonomy

Kingdom: Plantae Subfamily: Brassicoideae
Phylum: Tracheophyta Tribe:
Class: Magnoliopsida Genus: Brassica
Order: Brassicales Species: Brassica napus
Family: Brassicaceae Scientific Name Authorship: L.
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes: Brassica napus L.
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes: ::taxonomy:Brassica napus L.::endTaxonomy:

Collection

Country/Ocean: Norway (NO) Collection Date Start: 1961-08-20
Province/State: Troms Collection Date End:
Region/County: Balsfjord Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Malangen: Lanes - Hamnvag: Kjosen, ved lavebru. Elevation:
Habitat: Elevation Accuracy:
Latitude: 69.321 Depth:
Longitude: 18.842 Depth Accuracy:
Sampling Protocol:
Collectors: Kristian Lanes
Collection Note:

Ecology

Realm: Palearctic
Biome:
Ecoregion: Scandinavian_Montane_Birch_forest_and_grasslands

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/NNOR584-13
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ANNOR584-13&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ANNOR584-13&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsfLz8w8ytTDRNTS2zsnMzSxJTQEAvNQLEw==?length=3

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