Specimen Images



Collection Site(s)



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Sequence: ITS

Sequence ID: OLICH9110-23.ITS GenBank Accession: PP351749
Primers Forward: ITS1-F (CTTGGTCATTTAGAGGAAGTAA) mrSSU1 (AGCAGTGAGGAATATTGGTC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) mrSSU3R (ATGTGGCACGTCTATAGCCC)
Sequence Run Site: Centre for Biodiversity Genomics
AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTATCGAGAGGGGCTTCACCGCTCCGGGGGCTCCGGCCCCCACCTCTTCACCCTGTGATTACATACCTTCTGTTGCTTTGGTGGGTCTTGGGGTCATGCTCATATCGGCCTAGCCGGCGAGTACCCGCCAGTAGCCCCTTGTAACTCGATTAATTGGTGAAGTCTGAGTAATAGAATTAATGTTAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTGCACCCCTCAAGCGTAGCTTGGTCTTGGGTCCTCGCCCCCTGGGCGTACCCGAAAAGCATTGGCGGTCCGGTGTGACTTTAAGCGTAGTAAACATCCCCCGCTTTGAAAGCTCGCCCCGTGGCCGCCAGACAACCCTGAAATATATTATCAACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA
Locus: ITS
Nucleotides: 583 bp
Sequence Upload Date: 2024-01-26

Sequence: mtSSU

Sequence ID: OLICH9110-23.mtSSU GenBank Accession: PP351759
Primers Forward: ITS1-F (CTTGGTCATTTAGAGGAAGTAA) mrSSU1 (AGCAGTGAGGAATATTGGTC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) mrSSU3R (ATGTGGCACGTCTATAGCCC)
Sequence Run Site: University of Oslo, Natural History Museum
CGACTGAACCAGCAACTTGGAGGAATGAATAGCGATAGCTAATTGCATTATATTATAGTGTAATATCGACTATGTTGAATAAAATTCTGGGTATATTTATGATAATGACATTGTTTACCCACGTGTCTTGACCAAATTACGTGCCAGCAGTCGCGGTAATACGTAGAAGACTAGTGTTATTCATCTTTAATAGGTTTAAAGGGTACCTAGACGGTAAATAAAGCCTTGCGTAGCAGGACGGGACTAATTTACTAGAGTTACTTACAAGGAGGCTATAAAGTACTAATGGTGTAGAGATGAAATTTTGTAATACCATTTTCCTAAAGGAAAGTTATGGCACTGATAAAGGCGAAAGCATCCTCTTATGTGATAACTGACGTTGAGAGACGAAGGCTTTGGATCGCGAATAGGATTAGATACCCTAGTAGTCAAAGCAGACAATGATGAGTGTCATAGATTAGATATATAAGTTTACTCTATAAATGAAAGTGTAAGCACTCCACCTCAAGAGTAATTTGGCAACATTGGAACTGAAATCATTAGACCGTTTCTGAAACCAGTAGTGAAGTATGTTGTTTAATTTGATAATCCGCAAAACACCTTACCACAACTTGAATAAAAGTTTTTGCAAAAGATATTTTACAAGCGTTGCACGGCTGTCTACAGTTAATGTCGTGAGACTTTGGTTAGATCCATTAAATTAACGCAAGCCCTTACTTTATTTCTAAATAAAGTAGTTCTCCACTATATTGGATATGATAACAGGGACTAAGACAAGTCATCATGG
Locus: mtSSU
Nucleotides: 787 bp
Sequence Upload Date: 2023-11-20

Attribution

Specimen Depository: University of Oslo, Natural History Museum
Sequencing Center: Centre for Biodiversity Genomics,University of Oslo, Natural History Museum
Photography: Einar Timdal
Collectors: Einar Timdal
Specimen Identification: Einar Timdal

Identifiers

Process ID: OLICH9110-23 Sample ID: O-L-238942
Record Created: 2023-10-10 Museum ID: O-DFL-20139
Collection Code: L Field ID:
Deposited In: University of Oslo, Natural History Museum
Associated Datasets: DS-LECANIA | Lecania manuscript
Specimen Linkout:
Checksum: 7ed7466be9058c14d8d33db1aa2225e3

Taxonomy

Kingdom: Fungi Subfamily:
Phylum: Ascomycota Tribe:
Class: Lecanoromycetes Genus: Lecania
Order: Lecanorales Species: Lecania lepidota
Family: Ramalinaceae Scientific Name Authorship:
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes: Holotype of Lecania lepidota
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Vouchered:Registered Collection Reproduction:
Tissue Descriptor: apothecium Sex:
Brief Note: Life Stage:
Detailed Notes: DNA extracted once by OLICH project and once at NHM

Collection

Country/Ocean: Norway (NO) Collection Date Start: 2023-04-29
Province/State: Rogaland Collection Date End:
Region/County: Gjesdal Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Migaren Nature Reserve Elevation: 30
Habitat: On trunk of pollarded Fraxinus in decideous forest Elevation Accuracy:
Latitude: 58.846 Depth:
Longitude: 6.32 Depth Accuracy:
Sampling Protocol:
Collectors: Einar Timdal
Collection Note:

Ecology

Realm: Palearctic
Biome:
Ecoregion: Scandinavian_Montane_Birch_forest_and_grasslands

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/OLICH9110-23
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3AOLICH9110-23&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3AOLICH9110-23&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsfL38XT2sDQ0NNA1MrbOyczNLElNAQDP8Qtw?length=2

AJAX URLs


                

            

        

    






    


    

        

            

                
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