Specimen Images



Collection Site(s)



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Sequence: ITS1

Sequence ID: PNOR009-16.ITS1 GenBank Accession:
Primers Forward: Primers Reverse:
Sequence Run Site: Genoscope, Centre National de Sequencage
tcgaaccctgcaaagcagaacgacccgtgaacatgtaaacacaagttggtgctgttgtgatgggctttatgtttagatcagcaacgccatccggtgtgttttcaaggtatctcttttgtggtaccatggatgtcccatcggactataacaaaccccggcacggcatgtgccaaggaaaattaaataaaagatgctatttacttgatttgcctcgttttacggtgtgcatacaggtggtagccttctttaaaacactaa
Locus: ITS1
Nucleotides: 258 bp
Sequence Upload Date: 2020-03-13

Sequence: ITS2

Sequence ID: PNOR009-16.ITS2 GenBank Accession:
Primers Forward: Primers Reverse:
Sequence Run Site: Genoscope, Centre National de Sequencage
atctcgtcgccccctgccacacatcctaaaggtgtaataatggtcatgggggcggaaattggcctcccgttcttgtgtttggttggcctaaagatgagtccccttagggcggatgcacaactagtggtggttgaatagaccctcgtcttgtgttgtgtgtcgtgagctgtgagggaaattctcaatttagaccccactgtatcgttaaaaaacgatatatcga
Locus: ITS2
Nucleotides: 223 bp
Sequence Upload Date: 2020-03-13

Sequence: matK

Sequence ID: PNOR009-16.matK GenBank Accession:
Primers Forward: Primers Reverse:
Sequence Run Site: Genoscope, Centre National de Sequencage
atggagaaattccaaagctatttagggctagatagatctcaacaacactacttcttatatccacttatctttcaggagtatatttatgtacttgctcatgatcatggtttaaatagatcgattttgttggaaaatgcaggttatgacaataaatccagcttactaattgtgaaacgattaatcaatcgaatgtatcaacagaattatttgattctttcggttaataattctaaacagactccatttttggggcacaacaagaatttttattcgcaagtaatgtcagaggtatcttcaatcattatggaaattccattgtctctgcgattaagatcttccttagaaaggaaaggggtagtcaaatccgataatttacgatccattcattcaatattttcttttttagaggacaacttttcacatttaaattatgtattagatatactaataccttacccagcccatctggaaatcttggttcaggctcttcgctattggataaaagatccttcctctttgcatttattaagattctttctccatgagtgtcataattgggatagtcttattacttcaaattcaaagaaaggcagttcttctttttcaaaaagaaatcacagactattcttcttcctatatacttctcatgtatgtgaatatgaatcaggcttcctctttctccgtaaccaatcttctcacttacgatcaacatcttctggagctcttattgaacgaatatatttctatggaaaaatagaacatcttgcagaagtctttgccagggcttttcaagcgaatttatggttgttcaaagatcctttcatgcattatgttaggtatcaaggaaaatcaattcttgcttcaaaagggacgtttcttttgatgaataaatggaaatattattttgtcaatttctggaaatcttatttttacctgtggtctcaaccaggaaagatttatataaaccaattatccaatcattcccttgactttctgggttatcgttcaagtgtgcggctaaagtcttccatggtacgcagtcaaatgctagaaaatgcatttctaattgaaaatgctattaagaagtttgagactattgttccaattatgcctctcattggatcattggctaaatctaaattttgtaacgcatcggggcatcctattggtaaggtgatttgggccgatttatcagattctgatattattgaccgctttgggcgtatatacagaaatctttctcattatcatagtggatcttcaaaaaaaaagagtttgtatcgagtaaagtatatacttcgactttcttgtgctagaactttagctcgtaagcataaaagtactgtacgtgcttttttgaaaagattcggctcggaattattggaagaattctttacggaagaagaacaagttttttccttgacctttccaagagtttcttccatttcgcgaaggttatctagaaggcggatttggtatttggatattatttgtatcaatgatttggccaataatgaatga
Locus: matK
Nucleotides: 1521 bp
Sequence Upload Date: 2020-03-13

Sequence: rbcLa

Sequence ID: PNOR009-16.rbcLa GenBank Accession:
Primers Forward: Primers Reverse:
Sequence Run Site: Genoscope, Centre National de Sequencage
atgtcaccacaaacagagactaaagcaagtgttggattcaaagctggtgttaaagattataaattgacttattatactcctgactatgaaaccaaggatactgatattttggcagcatttcgagtaactcctcaacctggagttccgcctgaagaagcaggggccgcagtagctgccgaatcttctactggtacatggacaactgtgtggaccgatggacttacgagccttgatcgttacaaagggcgatgctatggaattgagcctgttcctggagaagaaagtcaatttattgcttatgtagcttacccattagacctttttgaagaaggttctgttactaacatgtttacttccattgtaggtaatgtatttgggttcaaagccctgcgtgctctacgtctggaagatttacgaatccctactgcgtatgttaaaactttccaaggtccgcctcacggcatccaagttgaaagagataaattgaacaagtatggtcgtcccctgttgggatgtactattaaacctaaattggggttatccgctaaaaactacggtagagctgtttatgaatgtcttcgtggtggccttgattttactaaagatgatgagaacgtgaactcccaaccatttatgcgttggagagaccgtttcttattttgtgccgaagctatttttaaatcacaagctgaaacaggtgaaatcaaagggcattacttgaatgctactgcgggtacatgcgaagaaatgatgaaaagggctatatttgccagagaattgggagttcctatcgtaatgcatgactacctaacagggggattcactgcaaatactagcttggctcattattgccgagataatggcctacttcttcacatccaccgcgcaatgcatgcagttattgatagacagaagaatcatggtatacactttcgtgtactagctaaagcgttacgtatgtctggtggagatcatattcattccggtaccgtagtaggtaaacttgaaggtgaaagagacatcactttgggctttgttgatttactgcgtgatgattttattgaaaaagatagaagtcgcggtatttatttcacccaagattgggtctctctaccaggtgttctacctgtagcttcgggcggtattcacgtttggcatatgcctgctctgaccgagatctttggggatgattccgtactacagttcggtggcggaactttagggcacccttggggaaatgcacctggtgccgtagctaatcgagtagctctagaagcatgtgtacaagctcgtaatgagggacgtgatcttgctattgagggtaatcaaattatccgtgaggctgccaaatggagtcctgaactagctgctgcttgtgaagtatggaaggagatcaaatttgagtttgaggcaatggatactatttga
Locus: rbcLa
Nucleotides: 1428 bp
Sequence Upload Date: 2020-03-13

Attribution

Specimen Depository: Tromso University Museum
Sequencing Center: Genoscope, Centre National de Sequencage
Photography: Iva Pitelkova
Collectors: Gamst, Solveig Bjerke
Specimen Identification: Torbjorn Alm

Identifiers

Process ID: PNOR009-16 Sample ID: TROM_V_960823_sg
Record Created: 2016-09-07 Museum ID: TROM_V_960823
Collection Code: Field ID:
Deposited In: Tromso University Museum
Associated Datasets:
Specimen Linkout:
Checksum: c11b6120f02af8a3f60a9b903c58f07f

Taxonomy

Kingdom: Plantae Subfamily: Cichorioideae
Phylum: Tracheophyta Tribe:
Class: Magnoliopsida Genus: Sonchus
Order: Asterales Species: Sonchus asper
Family: Asteraceae Scientific Name Authorship: (L.) Hill
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes: Sonchus asper (L.) Hill
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: Norway (NO) Collection Date Start: 2005-10-02
Province/State: Troms Collection Date End:
Region/County: Tromso Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Tromsoya: mellom Tromsobrua og det nye Tinghuset, i parken, i skraningen mot brua. Elevation: 5
Habitat: Elevation Accuracy:
Latitude: 69.6544 Depth:
Longitude: 18.9676 Depth Accuracy:
Sampling Protocol:
Collectors: Gamst, Solveig Bjerke
Collection Note:

Ecology

Realm: Palearctic
Biome:
Ecoregion: Scandinavian_coastal_conifer_forests

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/PNOR009-16
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3APNOR009-16&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3APNOR009-16&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsQrw8w8yMLDUNTSzzsnMzSxJTQEAvKELEA==?length=4

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