Specimen Images



Collection Site(s)



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Sequence: ITS1

Sequence ID: PNOR389-16.ITS1 GenBank Accession:
Primers Forward: Primers Reverse:
Sequence Run Site: Genoscope, Centre National de Sequencage
tcgtaccctggaaacagaacgacctgagaacgatgaaacatcactctcggtaggccggtttcttactgtgcctgctgattccgtggttatgcgttcatccttggccaagacttcagttttggttggatcgtacgcatagcttccggatatcaccaaaccccggcacgaaaagtgtcaaggaaaatgcaactaaacagcctgctttcgccaacccggagacggtgtttgttcggaagcagtgctgcaatgtaaagtctaaaa
Locus: ITS1
Nucleotides: 261 bp
Sequence Upload Date: 2020-03-13

Sequence: ITS2

Sequence ID: PNOR389-16.ITS2 GenBank Accession:
Primers Forward: Primers Reverse:
Sequence Run Site: Genoscope, Centre National de Sequencage
atcgtcgtccccccatcctctcgaggatatgggacggaagctgatctcccgtgtgttaccgcacgcggttggccaaaatccgagctaaggacgtcaggagcgtcttgacatgcggtggtgaatttaattctcgtcatatagtcagacgttccggtccaaaagctcttgatgacccaaagtcctca
Locus: ITS2
Nucleotides: 185 bp
Sequence Upload Date: 2020-03-13

Sequence: matK

Sequence ID: PNOR389-16.matK GenBank Accession:
Primers Forward: Primers Reverse:
Sequence Run Site: Genoscope, Centre National de Sequencage
atgtgtcatttcagaactcaagaaaataaagactttacttttagttcaaatcgaattttaatccaaatggagaaatttcaaggatatttagagttcgatggggctcgtcaacagagttttctatatccacttttttttcgggactatatttatgtacttgcttatgatcacggtttaaatagattaaatagaaaccgccctattttcttggaaaatgcggattatgacaaaaaatatagttcactaattgtgaaacgcttaattttgcgaatgtacgaacagaatcgtttgattattcccactaaggatttgaacaaaaatctggggcataccaataatttctattatcaaatgatatctgttttatttgcagtgattgtagaaattccattttccctaaggttgggatcctctatcgaaggaaaaaatgtaaaaaaatcttacaatttacaatcacttcattcaatatttccctttttagaagacaaactctcacattttaattatgtattagatgtactaataccttaccccatccatctagaaatcttggttcaaaccctacgttaccgggtaaaagatgcctcttctttgcatttttttcggttctgtctatacgagtattgcaattggaagaattttgatagtaaaaaaaaatcaattttgaatccaagatttttattgttcttatataattctcatgtatgtgaatacgaatccatctttttttttctacgcaagcagtcttctcatttacgatcgacatcttatgacgtcttttttgagcgaattttattctatggaaaaatacaacatttttttaaagtctttgttaataatttttcggcgctcttagggttgctcaaggatcctttcctacattatgttcgatatcatggaaaatacattctggcaacaaaggatacgccacttctgatgaataaatggaaatattattttgttaatttatggcaatgttatttttccgtatggtttcaatcgcaaaaggttaatataaatcaattatctaaagataatttagaatttctgggttatctatcaagtttgcgactaaaccctttagtggtacgtagtcaaatgctagaaaactcatttctaatagataatgttagaataaaattggatagcaacattccaatttcttctattattgggtcgttggctaaagataaattttgtaatgtattagggcatccgattagtaaagcgacctggacggattcatcagattctgatattctcaaccgatttgtgcgtatatgcagaaatatttcgcattattacagcggatcttcaaacaaaaagaatttgtatcgaataaaatatatacttcgtctttgttgtgttaaaactttggctcgtaaacacaaaagtactgtacgcgcttttttaaaaaggttgggctcgggtttattagaagaattccttacgggggaagaccaagttctttctttaatcttcccaagaagtgattatgcttctaaaagattatatcgagtgcgggtttggtatttggatattctttatcttaatgatttagtcaatcatgaataa
Locus: matK
Nucleotides: 1575 bp
Sequence Upload Date: 2020-03-13

Sequence: rbcLa

Sequence ID: PNOR389-16.rbcLa GenBank Accession:
Primers Forward: Primers Reverse:
Sequence Run Site: Genoscope, Centre National de Sequencage
atgtcaccacaaacagagactaaagcaagtgttggattcaaagctggtgttaaagagtataaattaaattattatactcctgaatatgaaaccaaggatactgatatcttggcagcattccgagtaactcctcaacccggagttccacctgaagaagcaggggctgcggtagctgctgaatcttctactggtacatggacaactgtgtggaccgatgggcttaccagccttgaccgttacaaaggacgatgctaccacatcgagcccgttccaggagaagaaactcaatttattgcgtatgtagcttacccattagacctttttgaagaagggtctgttactaacatgtttacctcaattgtgggtaacgtatttgggttcaaagccctggctgctctacgtctagaggatctgcgaatccctccggcttatactaaaactttccagggaccacctcatggtatccaagttgaaagagataaattgaacaagtatggacgtcccctattaggatgtactattaaacctaagttggggttatccgcgaagaactatggtagagcagtttatgaatgtctacgtggtggacttgattttaccaaagatgatgagaatgtgaactctcaaccatttatgcgttggagagaccgtttcttattttgtgccgaagctatttataaatcacaggctgaaacaggtgaaatcaaaggacattatttgaatgctactgcgggtacatgcgaagaaatgatgaaaagagctatatttgccagagaattgggagttcctatcgtaatgcatgactacttaacagggggattcaccgcaaatactagtttggctcattattgccgagataatggcctacttcttcacatccaccgtgcaatgcacgctgttattgatagacagaagaatcatggtatgcacttccgtgtactagctaaagctttacgtctatcgggtggagatcatgttcacgcgggtacagtagtaggtaaacttgaaggagacagggagtcaactttgggctttgttgatttactgcgcgatgattatgttgaaaaagaccgaagtcgtggtatctttttcactcaagattgggtctcactaccaggtgttctacctgtggcttcagggggtattcacgtttggcatatgcctgctttgaccgagatctttggagatgattccgtactacaatttggtggcggaactttaggccacccttggggaaatgcaccgggtgccgtagctaaccgagtagctctagaagcatgtgtacaagctcgtaatgagggacgtgatcttgcagtcgagggtaatgaaattatccgtgaggcttgcaaatggagtcctgaactagctgctgcttgtgaagtatggaaggagatcacatttaacttcccaaccatcgataaattagatggccaagactag
Locus: rbcLa
Nucleotides: 1440 bp
Sequence Upload Date: 2020-03-13

Attribution

Specimen Depository: Tromso University Museum
Sequencing Center: Genoscope, Centre National de Sequencage
Photography: Iva Pitelkova
Collectors: Nettelbladt, Mats G.: Bing, Ted: Hagen, Normann: Navjord, Inger: Olsen, Aud Borgso
Specimen Identification: Mats G. Nettelbladt

Identifiers

Process ID: PNOR389-16 Sample ID: TROM_V_651060_sg
Record Created: 2016-09-07 Museum ID: TROM_V_651060
Collection Code: Field ID:
Deposited In: Tromso University Museum
Associated Datasets:
Specimen Linkout:
Checksum: 7b61ac5a2f886a177afff51156d266a2

Taxonomy

Kingdom: Plantae Subfamily: Brassicoideae
Phylum: Tracheophyta Tribe:
Class: Magnoliopsida Genus: Brassica
Order: Brassicales Species: Brassica napus
Family: Brassicaceae Scientific Name Authorship: L.
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes: Corallorhiza trifida Chât.
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: Norway (NO) Collection Date Start: 2005-07-21
Province/State: Nordland Collection Date End:
Region/County: Saltdal Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Saltdal: Berghulnes. Elevation: 80
Habitat: Elevation Accuracy:
Latitude: 66.8568 Depth:
Longitude: 15.3089 Depth Accuracy:
Sampling Protocol:
Collectors: Nettelbladt, Mats G.: Bing, Ted: Hagen, Normann: Navjord, Inger: Olsen, Aud Borgso
Collection Note:

Ecology

Realm: Palearctic
Biome:
Ecoregion: Scandinavian_Montane_Birch_forest_and_grasslands

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/PNOR389-16
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3APNOR389-16&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3APNOR389-16&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsQrw8w8ytrDUNTSzzsnMzSxJTQEAvTMLGw==?length=4

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