Specimen Images



Collection Site(s)



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Sequence: ITS2

Sequence ID: SDH069-14.ITS2 GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) matK_xF (TAATTTACGATCAATTCATTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) matK-MALPR1 (ACAAGAAAGTCGAAGTAT) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
tccagaatctcgtgaaccatcgagtctttcaacacaagttgcgcctgaggccactcagccgagggcacgcctgcctgggcatcatgccacccatcgccccccctgacccctgcggcattcccatgcctcgctggggagcgaagaatggtcattcgcgcccgagtcctcgggcgcggtcagcagaaaaggagaacaccgtgcgacacgacacggcatgtgggggttgagaggcgatttgtcgccgatcgtacgttgcgccctcattccgccgctcggagccactcatgagaccagactcgctcgcagtcgtgggcgctcagaccgcgaccccaggtcaggcgtggtcacccattgaatttac
Locus: ITS2
Nucleotides: 361 bp
Sequence Upload Date: 2017-05-26

Sequence: matK

Sequence ID: SDH069-14.matK GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) matK_xF (TAATTTACGATCAATTCATTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) matK-MALPR1 (ACAAGAAAGTCGAAGTAT) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
CATCTGGAAATCTTGGTTCAAACCCTTCACTCTTGGATACAAGATACTCCTTCGTTGCATTTATTGCGATTCTCTCTCTACGAGTATTGGAATTCAAAT------------------------AGTCTCATTACTCCAAAAAATTCCATTTCCCTTTTTTCA------------------------------AAAGAGAAT------------CAAAGATTCTTCTTGTTCCTCTCTAATTCTCATGTATATGAATGTGAATTCATATTCATTTTTCTCCGTAAACAACCCTTTCATTTACGATCAAAATCTTTTGGATCCTTTCTTGAGCGAACACATTTC---------------TATGCAAAAATAGAATATCTT---------------------GTAGTAGTGCTTTGTAACGATTTTCAGAAA---------------ACCCTATGGTTGTTC------AAAGACCCTTTTATGCATTATGTCAGATATCAAGGAAAATCGATTCTGGCTTCAAGGGGG---GCTCGTCTTCTGATAAAG---AAATGGAAATCTCACCTTGTCAACTTTTGGCAATGTCATTTTTACTTGTGGTCTCAACCGGCC---------AGGATCCATATAAAG------CAATTATATAATCATCCC---------TTCTATTTTCTGGGC------TATCTTTCAAGT------GTACGACTAAACTCTTCGGTGATAAGGAGTCAAATGCTAGAGAATTCG---TTTCGAATAGATACT------GCTATTAAGAAATTCGAGACCGTAGTCCCAATTATTCCTCTGATTGGATCATTGGCTAAAGCAAAATTTTGTAATGTATCAGGGCATCCCATTAGTAAGCCGTTTCGGGCCGATTTGTCAGATTCTGAGATTCTCAATCGATTTGGGCGGATATGCAGAAATCTTTCTCATTATCACA
Locus: matK
Nucleotides: 958 bp
Sequence Upload Date: 2017-05-24

Sequence: rbcLa

Sequence ID: SDH069-14.rbcLa GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) matK_xF (TAATTTACGATCAATTCATTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) matK-MALPR1 (ACAAGAAAGTCGAAGTAT) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
AGTGTTGGATTCAAAGCTGGTGTTAAAGATTACAAATTGACTTATTATACTCCTGACTATGAAACCAAAGATACTGATATTTTGGCAGCATTTCGAGTAACTCCTCAACCCGGAGTTCCACCTGAGGAAGCAGGGGCTGCGGTAGCTGCCGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGACTTACCAGCCTTGATCGTTACAAAGGACGATGCTACCACATCGAGCCCGTTCCTGGGGAGGAAACTCAATTTATTGCCTATGTAGCTTACCCTTTAGACCTTTTTGAAGAAGGTTCTGTTACGAACATGTTTACTTCTATTGTGGGTAATGTATTTGGGTTCAAAGCTCTACGAGCTCTACGTCTGGAGGATCTGCGAATTCCTCCTGCTTATTCCAAAACTTTCCAAGGCCCGCCCCATGGCATCCAAGTTGAGAGAGATAAATTGAACAAGTATGGTCGTCCCCTATTGGGATGTACTATTAAACCAAAATTGGGGTTATCCGCCAAGAACTACGGTAGAGCGGTTTATGAATGTCTC
Locus: rbcLa
Nucleotides: 552 bp
Sequence Upload Date: 2017-05-24

Attribution

Specimen Depository: San Diego Natural History Museum, Herbarium
Sequencing Center: Centre for Biodiversity Genomics
Photography: Layla Aerne
Collectors: Jon P. Rebman
Specimen Identification: Jon P. Rebman

Identifiers

Process ID: SDH069-14 Sample ID: CCDB-24906-D09
Record Created: 2014-11-03 Museum ID: 154859
Collection Code: SD Field ID: CCDB-24906-D09
Deposited In: San Diego Natural History Museum, Herbarium
Associated Datasets: DS-SDNHM | San Diego Natural History Museum, Herbarium Barcodes
Specimen Linkout:
Checksum: 107e18710f9b8a7ef3e078273ca55d27

Taxonomy

Kingdom: Plantae Subfamily:
Phylum: Tracheophyta Tribe:
Class: Magnoliopsida Genus: Cinnamomum
Order: Laurales Species: Cinnamomum camphora
Family: Lauraceae Scientific Name Authorship: (L.) J. Presl
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes: Tree to 5 m tall. Note: this appears to be an escapee that has naturalized
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: United States (US) Collection Date Start: 2004-08-03
Province/State: California Collection Date End:
Region/County: San Diego Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Elevation: 5
Habitat: Riparian zone with Baccharis salicifolia, Salix spp., Populus fremontii, Eucalyptus camaldulensis, and Phoenix canariensis, alluvial sediments and wet, muddy areas Elevation Accuracy:
Latitude: 32.762 Depth:
Longitude: -117.199 Depth Accuracy:
Sampling Protocol:
Collectors: Jon P. Rebman
Collection Note:

Ecology

Realm: Nearctic
Biome:
Ecoregion: California_coastal_sage_and_chaparral

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/SDH069-14
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ASDH069-14&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ASDH069-14&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsQp28TAws9Q1NLHOyczNLElNAQCwywq0?length=3

AJAX URLs


                

            

        

    






    


    

        

            

                
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