Collection Site(s)
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Sequence: ITS2
| Sequence ID: | SDH124-14.ITS2 | GenBank Accession: | |
|---|---|---|---|
| Primers Forward: | ITS_S2F (ATGCGATACTTGGTGTGAAT) matK_xF (TAATTTACGATCAATTCATTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) | Primers Reverse: | ITS4 (TCCTCCGCTTATTGATATGC) matK-MALPR1 (ACAAGAAAGTCGAAGTAT) rbcLa-R (GTAAAATCAAGTCCACCRCG) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| tgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgcccgaagcca-ataggccgagggcacgtctgcctgggtgtcacac------attt-gctt-g----ccctcaaac----------act-cactcc-----------ttgat-----ga------gg--ggtgtt-----ggtttt-tgggcggaaattggcctcccgtgcc--gt---gt------------tgtgcggttggcgc--aaaag-------cgagt-ctcc--ggcg----------acg-gacgtcgtg-aca--tcggtggttg---taaaaggc-------------cc-tcttg--------------tttt-------------g------tcgcacgta-attgtgtcatctaag--------gagct------------------------------------cgaggac----------------cctga--------g-----gc--g---ctacac------------------------------aatttgttcgc-c------ttaac-tgtgaccccaggtcaggcgggactacccgctgagtttaa | |||
| Locus: | ITS2 | ||
| Nucleotides: | 612 bp | ||
| Sequence Upload Date: | 2017-05-26 | ||
Sequence: matK
| Sequence ID: | SDH124-14.matK | GenBank Accession: | |
|---|---|---|---|
| Primers Forward: | ITS_S2F (ATGCGATACTTGGTGTGAAT) matK_xF (TAATTTACGATCAATTCATTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) | Primers Reverse: | ITS4 (TCCTCCGCTTATTGATATGC) matK-MALPR1 (ACAAGAAAGTCGAAGTAT) rbcLa-R (GTAAAATCAAGTCCACCRCG) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| CATCTGGAAATATTGGTTCAAACTCTTCGCTATTGGGTAAAAGACGCTTCTTCTTTACATTTATTAAGATTCTTTCTCCACGAGTATCGTAGT------------------TGGAAT---------ACTCCAAAT------AAAGCCAGTTCTTGTTTTTCA------------------------------AAAAGAAAT------------CAAAGGTTTTTCTTCGTCCTATATAATTCTTATCTATGTGAATACGAATCCATCTTCGTCTTTCTTCGTAACCAATCTTCTCATTTATGCTCAACGTCTTCTGGAACCCTTCTTGAACGAATCTTTTTC---------------TATGGAAAAATAGAACATCTTGGA---------------CTTGTAGAAGCTTTTGCTAAGGCCTTTCAGGAC---------------AATCTATGGTTGTTT------AAGGACCCTTTCATGCATTATATTAGGTATCAAGGAAAATCAATTCTCGCTTCAAAAGGG---ACGCCCCTTTTGATGAAA---AAATGGACATATTTTTTTGTCAATTTATGGAAATGTCATTTTTACCTATGGTCTCAGCCGGGA---------CGGGTCTGTATAAAC------CAATTATATAATCATTCC---------CTAGCTCTTCTGGGC------TATCTATCAAGT------GCGCGACTAAATCCTTCAATGATACGCAGTCAAATGCTAGAAAATGCA---TTTCTAATTGATAAT------CCTATTAATAAGTTCGATACTCTTGTTCCAATTGTTCCTCTGATTGGATCATTGGCTAAGGCGAGATTTTGTAACGTATTGGGGCACCCTATTAGTAAGGCGGTTTGGACTGATTTATCAGATTCTGATATTGTTGTCCGATTTGGGAGTATCTGCAGAAATCTTTCTC | |||
| Locus: | matK | ||
| Nucleotides: | 949 bp | ||
| Sequence Upload Date: | 2017-05-24 | ||
Sequence: rbcLa
| Sequence ID: | SDH124-14.rbcLa | GenBank Accession: | |
|---|---|---|---|
| Primers Forward: | ITS_S2F (ATGCGATACTTGGTGTGAAT) matK_xF (TAATTTACGATCAATTCATTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) | Primers Reverse: | ITS4 (TCCTCCGCTTATTGATATGC) matK-MALPR1 (ACAAGAAAGTCGAAGTAT) rbcLa-R (GTAAAATCAAGTCCACCRCG) |
| Sequence Run Site: | Centre for Biodiversity Genomics | ||
| GGTGTTGGATTCAAAGCTGGGGTTAAAGATTACAAATTGACTTATTATACTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAAGTCCTCAACCTGGAGTTCCACCTGAAGAAGCGGGGGCCGCGGTAGCTGCCGAATCTTCTACTGGTACATGGACCACTGTGTGGACCGATGGACTTACCAGTCTTGATCGTTACAAAGGGCGCTGCTACGGAATCGAGCCCGTTGCTGGAGAAGAAAATCAATATATCGCTTATGTAGCTTACCCATTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTAGGTAATGTATTTGGGTTCAAAGCCCTGCGCGCTCTACGTCTGGAAGATCTGCGAATCCCCGTTGCTTATGTTAAAACTTTCCAAGGACCGCCTCATGGCATCCAAGTTGAGAGAGATAAATTGAACAAGTATGGTCGTCCCCTGTTGGGATGTACTATTAAACCTAAATTGGGGTTATCCGCTAAAAACTACGGTAGAGCGGTTTATGAATGTCTC | |||
| Locus: | rbcLa | ||
| Nucleotides: | 552 bp | ||
| Sequence Upload Date: | 2017-05-24 | ||
Attribution
| Specimen Depository: | San Diego Natural History Museum, Herbarium |
|---|---|
| Sequencing Center: | Centre for Biodiversity Genomics |
| Photography: | CBG Photography Group |
| Collectors: | Jon Rebman |
| Specimen Identification: |
Identifiers
| Process ID: | SDH124-14 | Sample ID: | CCDB-24907-D04 | |||
|---|---|---|---|---|---|---|
| Record Created: | 2014-11-03 | Museum ID: | 143043 | |||
| Collection Code: | SD | Field ID: | CCDB-24907-D04 | |||
| Deposited In: | San Diego Natural History Museum, Herbarium | |||||
| Associated Datasets: | DS-SDNHM | San Diego Natural History Museum, Herbarium Barcodes | |||||
| Specimen Linkout: | ||||||
| Checksum: | 6280f2b925dcc5b6b579242144968a42 | |||||
Taxonomy
Specimen
| Voucher Status: | Reproduction: | ||
|---|---|---|---|
| Tissue Descriptor: | Sex: | ||
| Brief Note: | Life Stage: | ||
| Detailed Notes: | |||
Collection
| Country/Ocean: | United States (US) | Collection Date Start: | 1997-05-22 |
|---|---|---|---|
| Province/State: | California | Collection Date End: | |
| Region/County: | San Diego | Coord. Source: | |
| Sector: | Coord. Accuracy: | ||
| Exact Site: | San Felipe Valley Wildlife Area: NE of Julian: Along S-2, north of Hwy. 78 | Elevation: | 790 |
| Habitat: | Chaparral and Desert Scrub communities | Elevation Accuracy: | |
| Latitude: | 33.146 | Depth: | |
| Longitude: | -116.544 | Depth Accuracy: | |
| Sampling Protocol: | |||
| Collectors: | Jon Rebman | ||
| Collection Note: | |||
Ecology
| Realm: | Nearctic |
|---|---|
| Biome: | |
| Ecoregion: | Sonoran_desert |
Publications
Electropherogram Trace Files
Under development - available shortly
Controller URLs
http://portal.boldsystems.org/record/SDH124-14 http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ASDH124-14&fields=marker_code http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ASDH124-14&extent=limited http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsQp28TA0MtE1NLHOyczNLElNAQCwaQqs?length=3