Specimen Images



Collection Site(s)



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Sequence: matK

Sequence ID: SDH2194-14.matK GenBank Accession:
Primers Forward: matK_xF (TAATTTACGATCAATTCATTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: matK-MALPR1 (ACAAGAAAGTCGAAGTAT) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
CATATGGAAATCTTGGTTCAAATTCTTCAATGCTGGATTCAGGATGTTCCTTTTTTACATTTATTGCGATTTTTTCTTCACGAA------TATCATAAT------------TGGAATAGTCTTCTCATTTCTCAG---AAGAAATCTATTTACCGTTTTTCA------------------------------AAA------GAAAAT------AAAAGATTATTTCGGTTCCTATTCAATTCTTATATATTTGAATGTGAATTTTTATTAGTTTTTATTCGTAAACAATCTTCTTATTTACGATTAACATCTTCTGGGACTTTTCTTGAACGAACCCATTTCTATGGA---------------AAAATAGAACATCTTCAAATAGAACAT------TTTATAGTAGTATGTCGTAACTATTTTCATAGA---------------ACCTTATGGTTCTTC------AAAGATCCTTTCATGCATTATGTTCGATATCAAGGAAAAGCAATTCTTGCTTCAAAGGGG---ACTCATCTTCTGATGAAG---AAGTGGAAATATCATTTTGTCAATTTCTGGCAATATTATTTTCACTTTTGGTCTCAACCATAC---------AGGATCCATATAAAC------CAATTATCAAACTATTCT---------TTTTATTTTCTGGGT------TATCTTTCAAGT------CTACTAATAAATTTTTCGCCGGTAAGGAATCAAATGTTAGAGAATTCA---TTTCTAATAGATACCGTTACT------AAGAAATTTGATACCGTAGTTCCGGTTATTCTTCTTATTCGATCCTTGGCTAAAGCTAAATTTTGTACCGTATCGGGCCATCCTATTAGTAAGCCGATCTGGGCCGAGTTATCAGATTCTGATATTCTTGATCGATTCGGTCGGATATGTAGAA
Locus: matK
Nucleotides: 940 bp
Sequence Upload Date: 2017-05-24

Sequence: rbcLa

Sequence ID: SDH2194-14.rbcLa GenBank Accession:
Primers Forward: matK_xF (TAATTTACGATCAATTCATTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: matK-MALPR1 (ACAAGAAAGTCGAAGTAT) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
AGTGTTGGATTTAAAGCTGGTGTTAAAGATTACAGATTGACTTATTATACTCCTGATTACGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAATGACTCCTCAACCCGGAGTTCCCCCTGAAGAAGCGGGCGCTGCGGTAGCTGCCGAATCTTCTACTGGTACATGGACAACTGTGTGGACTGATGGACTTACCAGTCTTGATCGTTACAAAGGACGATGCTACCACATCGAGGCTGTTATTGGGGAAGAAAATCAATTTATTGCTTATGTAGCTTATCCTTTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTATTTGGTTTCAAAGCCCTACGAGCTCTACGTTTGGAGGATCTGCGAATTCCCCCTGCTTATTCCAAAACTTTCCAAGGCCCGCCTCATGGTATCCAAGTTGAAAGAGATAAATTGAACAAGTATGGTCGTCCCCTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCGCAAAAAACTACGGTAGAGCAGTTTATGAATGTCTA
Locus: rbcLa
Nucleotides: 552 bp
Sequence Upload Date: 2017-05-24

Attribution

Specimen Depository: San Diego Natural History Museum, Herbarium
Sequencing Center: Centre for Biodiversity Genomics
Photography:
Collectors: Jon P. Rebman
Specimen Identification: Jon P. Rebman

Identifiers

Process ID: SDH2194-14 Sample ID: CCDB-24953-H02
Record Created: 2014-11-03 Museum ID: 238437
Collection Code: SD Field ID: CCDB-24953-H02
Deposited In: San Diego Natural History Museum, Herbarium
Associated Datasets: DS-SDNHM | San Diego Natural History Museum, Herbarium Barcodes
Specimen Linkout:
Checksum: 28affeb3b55093afbc2ec5b92ac0d626

Taxonomy

Kingdom: Plantae Subfamily: Asparagoideae
Phylum: Tracheophyta Tribe:
Class: Liliopsida Genus: Asparagus
Order: Asparagales Species: Asparagus asparagoides
Family: Asparagaceae Scientific Name Authorship: (L.) Druce
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes: Herbaceous perennial vine, flowers white; common
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: United States (US) Collection Date Start: 2014-02-25
Province/State: California Collection Date End:
Region/County: San Diego Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Camp Pendleton: southwest portion of Base: Training Area Oscar 1, north of the Santa Margarita River between I-5 & Stuart Mesa Road, around a pond Elevation: 3
Habitat: Riparian with Salix lasiolepis, Salix laevigata, Isocoma menziesii, Schoenoplectus californica, Pluchea sericea, Baccharis pilularis ssp. consanguinea, & Artemisia californica Elevation Accuracy:
Latitude: 33.24 Depth:
Longitude: -117.402 Depth Accuracy:
Sampling Protocol:
Collectors: Jon P. Rebman
Collection Note:

Ecology

Realm: Nearctic
Biome:
Ecoregion: California_coastal_sage_and_chaparral

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/SDH2194-14
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ASDH2194-14&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ASDH2194-14&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsQp28TAytDTRNTSxzsnMzSxJTQEAuhIK5Q==?length=2

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