Specimen Images



Collection Site(s)



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Sequence: ITS2

Sequence ID: SDH2546-14.ITS2 GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
tgcagaatcccgtgaaccatcgagtttttgaacgcaagttgcgccctaagcttccgggccgagggcaagcctgcgt---gggcgtcaagttacgttgctcgctcac-cctcctcg---------aggtc-cattttg----ttgaggcctcttggtt-------------------agg-gtgt-----------tcgaagtggag--attgac-cctccattc--tcttttgacg-agtggtgggttgaagttttta------ttgccgccggta---ttcgtgcaagggcatg------------------------------acggtt-gaagtcttgtagtcttgg----------------------------acgtcttcgtccactac-ggcttacttgtcgttctcgtc------------gatccggtgtcg-tt-ccca-gttcatgg------------------------ca------------------------------------ttttgccttgatcaacatcgc---gaccccacgtcaggctagaccacccgctgagtttaa
Locus: ITS2
Nucleotides: 580 bp
Sequence Upload Date: 2017-05-26

Sequence: rbcLa

Sequence ID: SDH2546-14.rbcLa GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
AGTGCTGGATTTAAAGCTGGTGTTAAAGATTACAAATTGACTTATTATACTCCTGAATATGAAACCAAGGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCCGGAGTTCCACCTGAGGAAGCGGGGGCTGCAGTAGCTGCCGAATCCTCTACTGGTACATGGACAACTGTATGGACTGATGGACTTACTAGCTTGGATCGTTACAAAGGGCGATGCTACCACATCGAGCCTGTTGCTGGCACTGAAAATCAATTTATTGCCTATGTAGCTTATCCTTTAGACCTTTTTGAAGAAGGTTCCGTTACTAACATGTTTACTTCGATTGTGGGTAATGTATTTGGGTTCAAAGCTCTTTCAGCTCTACGTTTGGAAGATCTACGAATTCCTCCTGCTTATTCAAAAACTTTCCAAGGTCCTCCTCACGGAATCCAGGTTGAGAGAGATAAATTGAATAAGTATGGTCGTCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCGCGAAAAACTACGGTAGAGCAGTTTATGAATGTCTA
Locus: rbcLa
Nucleotides: 552 bp
Sequence Upload Date: 2017-05-24

Attribution

Specimen Depository: San Diego Natural History Museum, Herbarium
Sequencing Center: Centre for Biodiversity Genomics
Photography:
Collectors: Henk van der Werff
Specimen Identification:

Identifiers

Process ID: SDH2546-14 Sample ID: CCDB-24956-E10
Record Created: 2014-11-03 Museum ID: 106477
Collection Code: SD Field ID: CCDB-24956-E10
Deposited In: San Diego Natural History Museum, Herbarium
Associated Datasets: DS-SDNHM | San Diego Natural History Museum, Herbarium Barcodes
Specimen Linkout:
Checksum: 5854e39a660e9258fa3b6a4d667d7c6d

Taxonomy

Kingdom: Plantae Subfamily:
Phylum: Tracheophyta Tribe:
Class: Liliopsida Genus: Potamogeton
Order: Alismatales Species: Potamogeton nodosus
Family: Potamogetonaceae Scientific Name Authorship: Poir.
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes:
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: United States (US) Collection Date Start: 1980-06-21
Province/State: California Collection Date End:
Region/County: San Diego Coord. Source:
Sector: Coord. Accuracy:
Exact Site: `Pine Valley, Corte Madera Ranch` Elevation: 1200
Habitat: Elevation Accuracy:
Latitude: 32.764 Depth:
Longitude: -116.573 Depth Accuracy:
Sampling Protocol:
Collectors: Henk van der Werff
Collection Note:

Ecology

Realm: Nearctic
Biome:
Ecoregion: California_montane_chaparral_and_woodlands

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/SDH2546-14
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ASDH2546-14&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ASDH2546-14&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsQp28TAyNTHTNTSxzsnMzSxJTQEAuiEK5g==?length=2

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