Specimen Images



Collection Site(s)



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Sequence: ITS2

Sequence ID: SDH667-14.ITS2 GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
tgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaagccttctggccgagggcacgtctgcctgggtgtcacaa-ac--cgtcgt---------ccctc--acc-----------atc---------------ctttg---------------------ctgatgcgg----------------------------------------------gacgg---------aagctggt-c-tcccgt--gtg--t--tacc------gcacg-----cggttggcct-aaa--tccgag-c--caaggac-g-cctgga-g-cgtaccgacatg-cggt-g---gtga----------act-----tgat---cca---------------------------------ttacattttatcggtcgct---------------------cttgtcc---------------------ggaagctg-tagatga----------ccc---------------------------------aaag--------tccatata-gcgaccccaggtcaggcgggattacccgctgagtttaa
Locus: ITS2
Nucleotides: 609 bp
Sequence Upload Date: 2017-05-26

Sequence: rbcLa

Sequence ID: SDH667-14.rbcLa GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
AGTGTTGGGTTCAAAGCTGGTGTTAAAGAGTATAAATTGACTTACTATACTCCTGAATATGAAACCAAGGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCTGGAGTTCCACCTGAAGAAGCAGGGGCTGCGGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGCCTTGATCGTTACAAAGGACGATGCTACCACATCGAGCCCGTTCCAGGAGAAGAAACTCAATTTATTGCGTATGTAGCTTATCCCTTAGACCTTTTTGAAGAAGGTTCGGTTACTAACATGTTTACCTCGATTGTGGGTAATGTATTTGGGTTCAAAGCCCTGGCTGCTCTACGTCTAGAGGATCTGCGAATCCCTCCTGCTTATACTAAAACTTTCCAAGGACCACCTCATGGTATCCAAGTTGAAAGAGATAAATTGAACAAGTATGGACGTCCCCTATTAGGATGTACTATTAAACCAAAATTGGGGTTATCC
Locus: rbcLa
Nucleotides: 516 bp
Sequence Upload Date: 2017-05-24

Attribution

Specimen Depository: San Diego Natural History Museum, Herbarium
Sequencing Center: Centre for Biodiversity Genomics
Photography: Layla Aerne
Collectors: Frank F. Gander
Specimen Identification:

Identifiers

Process ID: SDH667-14 Sample ID: CCDB-24937-G01
Record Created: 2014-11-03 Museum ID: 92907
Collection Code: SD Field ID: CCDB-24937-G01
Deposited In: San Diego Natural History Museum, Herbarium
Associated Datasets: DS-SDNHM | San Diego Natural History Museum, Herbarium Barcodes
Specimen Linkout:
Checksum: 9f1a457b03b052ff134c82479fbdd5c9

Taxonomy

Kingdom: Plantae Subfamily: Brassicoideae
Phylum: Tracheophyta Tribe:
Class: Magnoliopsida Genus: Arabidopsis
Order: Brassicales Species: Arabidopsis thaliana
Family: Brassicaceae Scientific Name Authorship: (L.) Heynh.
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes:
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: United States (US) Collection Date Start: 1975-05-07
Province/State: California Collection Date End:
Region/County: San Diego Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Silverwood Wildlife Sanctuary Elevation:
Habitat: Elevation Accuracy:
Latitude: 32.918 Depth:
Longitude: -116.874 Depth Accuracy:
Sampling Protocol:
Collectors: Frank F. Gander
Collection Note:

Ecology

Realm: Nearctic
Biome:
Ecoregion: California_coastal_sage_and_chaparral

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/SDH667-14
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ASDH667-14&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ASDH667-14&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsQp28TAzM9c1NLHOyczNLElNAQCxBwq4?length=2

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