Specimen Images



Collection Site(s)



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Sequence: ITS2

Sequence ID: SDH676-14.ITS2 GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) matK_xF (TAATTTACGATCAATTCATTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) matK-MALPR1 (ACAAGAAAGTCGAAGTAT) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
tgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaagccttctggccgagggcacgtctgcctgggtgtcacaa-at--cgtcgt---------ccccc--c-a-----------tcc---------------tctcg---------------------aggatattg----------------------------------------------gacgg---------aagctggt-c-tcccgt--gtg--t--tacc------gcacg-----cggttgacca-aaa--tccgag-c--taaggat-g-ccagga-g-cgtctcgacatg-cggt-g---gtga----------att-----aaat---ctc-----------------ct--------------cgtcatatagtcggtcgtt---------------------ccggtcc---------------------gaaagctc-ttgatga----------ccc---------------------------------aaag--------tcctcaac-gcgaccccaggtcaggcgggatcacccgctgagtttaa
Locus: ITS2
Nucleotides: 609 bp
Sequence Upload Date: 2017-05-26

Sequence: matK

Sequence ID: SDH676-14.matK GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) matK_xF (TAATTTACGATCAATTCATTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) matK-MALPR1 (ACAAGAAAGTCGAAGTAT) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
CAAGATTTTTTTTGTTCTTATATAATTCTCATGTATGTGAATACGAATCCATCTTTTTTTTTCTACGGAAGCAGTCTTCTCATTTACGATCGACATCCTATGAAGTCTTTTTTGAGAGAATTTTATTC---------------TATGGAAAAATACAACAT---------------------TTTTTAAAAGTCTTTGTTAAT------AAT---TTTCCG------TCGATCTTAGGGTTGCTC------AAGGATCCTTTCCTACATTATGTTAGATATCATGGAAAATACATTCTGGCAACAAAGGAT---ACGCCGCTTCTGATGAAT---AAATGGAAATATTATTTTGTTAATTTATGGCAATGTTATTTTTCCGTATGGTTTCAATCGCAA---------AAGATTAATATAAAT------CAATTATCTAAAGATAAT---------TTCGAATTTCTGGGT------TATCTCTCAAGT------TTGCGACTAAATCCTTTAGTGGTACGTAGTCAAATGCTAGAAAACTCC---TTTCTAATAGATA
Locus: matK
Nucleotides: 558 bp
Sequence Upload Date: 2017-05-24

Sequence: rbcLa

Sequence ID: SDH676-14.rbcLa GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) matK_xF (TAATTTACGATCAATTCATTC) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) matK-MALPR1 (ACAAGAAAGTCGAAGTAT) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
AGTGTTGGATTCAAAGCTGGTGTTAAAGAGTATAAATTGACTTATTATACTCCTGAATATGAAACCAAGGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCCGGAGTTCCACCTGAAGAAGCAGGGGCTGCGGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGCCTTGACCGTTACAAAGGACGATGCTACCACATCGAGCCCGTTCCAGGAGAAGAAACTCAATTTATTGCGTATGTAGCTTACCCCTTAGACCTTTTTGAAGAAGGGTCGGTTACTAACATGTTTACCTCAATTGTGGGTAACGTATTTGGGTTCAAAGCCCTAGCTGCTCTACGTCTAGAGGATCTGCGAATCCCTCCTGCTTATACTAAAACTTTCCAGGGACCACCTCATGGTATCCAAGTTGAAAGAGATAAATTGAACAAGTATGGACGTCCCCTATTAGGATGTACTATTAAACCTAAGTTGGGTTTATCCGCGAAGAACTATGGTAGAGCAGTTTATGAATGTCTA
Locus: rbcLa
Nucleotides: 552 bp
Sequence Upload Date: 2017-05-24

Attribution

Specimen Depository: San Diego Natural History Museum, Herbarium
Sequencing Center: Centre for Biodiversity Genomics
Photography: Layla Aerne
Collectors: W. P. Armstrong
Specimen Identification:

Identifiers

Process ID: SDH676-14 Sample ID: CCDB-24937-F02
Record Created: 2014-11-03 Museum ID: 212772
Collection Code: SD Field ID: CCDB-24937-F02
Deposited In: San Diego Natural History Museum, Herbarium
Associated Datasets: DS-SDNHM | San Diego Natural History Museum, Herbarium Barcodes
Specimen Linkout:
Checksum: 1a3043e8004abcf042126e5c4a99efdc

Taxonomy

Kingdom: Plantae Subfamily: Brassicoideae
Phylum: Tracheophyta Tribe:
Class: Magnoliopsida Genus: Brassica
Order: Brassicales Species: Brassica fruticulosa
Family: Brassicaceae Scientific Name Authorship:
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes: Abundant, naturalized annual mustard in vacant fields
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: United States (US) Collection Date Start: 2010-03-27
Province/State: California Collection Date End:
Region/County: San Diego Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Elevation: 231
Habitat: Elevation Accuracy:
Latitude: 33.076 Depth:
Longitude: -117.093 Depth Accuracy:
Sampling Protocol:
Collectors: W. P. Armstrong
Collection Note:

Ecology

Realm: Nearctic
Biome:
Ecoregion: California_coastal_sage_and_chaparral

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/SDH676-14
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ASDH676-14&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ASDH676-14&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsQp28TAzN9M1NLHOyczNLElNAQCxCAq4?length=3

AJAX URLs


                

            

        

    






    


    

        

            

                
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