Specimen Images



Collection Site(s)



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Sequence: ITS2

Sequence ID: SDH677-14.ITS2 GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
tgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaagccttctggccgagggcacgtctgcctgggtgtcacaa-at--cgtcgt---------ccccc--c-a-----------tcc---------------tctcg---------------------aggatatgg----------------------------------------------gacgg---------aagctgat-c-tcccgt--gtg--t--tacc------gcacg-----cggttggcca-aaa--tccgag-c--taaggac-g-tcagga-g-cgtcttgacatg-cggt-g---gtga----------att-----taa-----tt-----------------ct--------------cgtcatatagtcagacgtt---------------------ccggtcc---------------------aaaagctc-ttgatga----------ccc---------------------------------aaag--------tcctcaac-gcgaccccaggtcaggcgggatcacccgctgagtttaa
Locus: ITS2
Nucleotides: 609 bp
Sequence Upload Date: 2017-05-26

Sequence: rbcLa

Sequence ID: SDH677-14.rbcLa GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
AGTGTTGGATTCAAAGCTGGTGTTAAAGAGTATAAATTAAATTATTATACTCCTGAATATGAAACCAAGGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCCGGAGTTCCACCTGAAGAAGCAGGGGCTGCGGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGCCTTGACCGTTACAAAGGACGATGCTACCACATCGAGCCCGTTCCAGGAGAAGAAACTCAATTTATTGCGTATGTAGCTTACCCATTAGACCTTTTTGAAGAAGGGTCTGTTACTAACATGTTTACCTCAATTGTGGGTAACGTATTTGGGTTCAAAGCCCTGGCTGCTCTACGTCTAGAGGATCTGCGAATCCCTCCGGCTTATACTAAAACTTTCCAGGGACCACCTCATGGTATCCAAGTTGAAAGAGATAAATTGAACAAGTATGGACGTCCCCTATTAGGATGTACTATTAAACCTAAGTTGGGGTTATCCGCGAAGAACTATGGTAGAGCAGTTTATGAATGTCTA
Locus: rbcLa
Nucleotides: 552 bp
Sequence Upload Date: 2017-05-24

Attribution

Specimen Depository: San Diego Natural History Museum, Herbarium
Sequencing Center: Centre for Biodiversity Genomics
Photography: Layla Aerne
Collectors: Jon Rebman
Specimen Identification:

Identifiers

Process ID: SDH677-14 Sample ID: CCDB-24937-E02
Record Created: 2014-11-03 Museum ID: 143674
Collection Code: SD Field ID: CCDB-24937-E02
Deposited In: San Diego Natural History Museum, Herbarium
Associated Datasets: DS-SDNHM | San Diego Natural History Museum, Herbarium Barcodes
Specimen Linkout:
Checksum: 185e08b09f8300a0b8dad212e18817ab

Taxonomy

Kingdom: Plantae Subfamily: Brassicoideae
Phylum: Tracheophyta Tribe:
Class: Magnoliopsida Genus: Brassica
Order: Brassicales Species: Brassica napus
Family: Brassicaceae Scientific Name Authorship: L.
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes: Annual; flowers yellow, leaves glaucous. Note: shorter petals.
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: United States (US) Collection Date Start: 1999-04-27
Province/State: California Collection Date End:
Region/County: San Diego Coord. Source:
Sector: Coord. Accuracy:
Exact Site: `Marine Corps Air Station Miramar, east of Interstate 15 and west of Santee: Training area #1 on far east side of station near Sycamore Canyon.` Elevation: 230
Habitat: Chaparral; Coastal Sage Scrub Elevation Accuracy:
Latitude: 32.896 Depth:
Longitude: -116.997 Depth Accuracy:
Sampling Protocol:
Collectors: Jon Rebman
Collection Note:

Ecology

Realm: Nearctic
Biome:
Ecoregion: California_coastal_sage_and_chaparral

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/SDH677-14
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ASDH677-14&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ASDH677-14&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsQp28TAzN9c1NLHOyczNLElNAQCxFAq5?length=2

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