Specimen Images



Collection Site(s)



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Sequence: ITS2

Sequence ID: SDH960-14.ITS2 GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
tgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgcccgaagccg-tcaggccgagggcacgtctgcctgggcgtcacgc------atcg-cgtc-g-c--cccat-------------------ccccc-----------ccgcg-----gg-a----------------------t-g-ggtgcggatgttggccccccgtgcc--ccta-tcta--------gggacgcggccggccc--aaatg------c-gagt-cc-tt-ggcg----------acg-gacgtcacg-gcga-gtggtggaat---aa-tac------t--------ctca-t-t----------------tc--------gc---g------tcgtgaccc------gtcgg----------------ca----tcggacga-------------------------ccgacc----------------ctt------tcg-a-----gc--g-------------------------------------------aatgctc-t------ccgac-cgcgaccccaggtcaggcgggattacccgctgaatttaa
Locus: ITS2
Nucleotides: 612 bp
Sequence Upload Date: 2017-05-26

Sequence: rbcLa

Sequence ID: SDH960-14.rbcLa GenBank Accession:
Primers Forward: ITS_S2F (ATGCGATACTTGGTGTGAAT) rbcLa-F (ATGTCACCACAAACAGAGACTAAAGC) Primers Reverse: ITS4 (TCCTCCGCTTATTGATATGC) rbcLa-R (GTAAAATCAAGTCCACCRCG)
Sequence Run Site: Centre for Biodiversity Genomics
AGTGTTGGATTCAAAGCTGGTGTTAAAGACTACAAATTGACTTATTATACTCCTGAGTACGAAACCAAAGATACTGATATCTTGGCAGCTTTCCGAGTAACTCCTCAACCTGGAGTTCCGCCGGAAGAAGCTGGGGCCGCGGTAGCTGCGGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGACTTACCAGCCTTGATCGGTACAAGGGGCGATGCTACCGCATCGAGCGCGTTGTTGGAGAAAAAGATCAATTTATTGCTTATGTAGCTTACCCGTTAGACCTTTTTGAAGAAGGTTCTGTTACCAACATGTTTACTTCCATTGTGGGTAATGTATTTGGGTTCAAAGCCCTGCGCGCTCTACGTCTGGAAGATCTACGAGTCCCTACGGCTTATATTAAAACTTTCCAAGGCCCGCCTCATGGCATCCAAGTTGAGAGAGATAAATTGAATAAGTATGGGCGTCCTCTGTTGGGATGTACTATTAAACCAAAATTGGGGTTATCCGCTAAAAACTACGGTAGAGCGGTTTATGAATGTCTT
Locus: rbcLa
Nucleotides: 552 bp
Sequence Upload Date: 2017-05-24

Attribution

Specimen Depository: San Diego Natural History Museum, Herbarium
Sequencing Center: Centre for Biodiversity Genomics
Photography: Layla Aerne
Collectors: Gay Dorius
Specimen Identification: Jon P. Rebman

Identifiers

Process ID: SDH960-14 Sample ID: CCDB-24940-G02
Record Created: 2014-11-03 Museum ID: 154858
Collection Code: SD Field ID: CCDB-24940-G02
Deposited In: San Diego Natural History Museum, Herbarium
Associated Datasets: DS-SDNHM | San Diego Natural History Museum, Herbarium Barcodes
Specimen Linkout:
Checksum: d7caaedd2d3076bc642ee5626c7555f7

Taxonomy

Kingdom: Plantae Subfamily:
Phylum: Tracheophyta Tribe:
Class: Magnoliopsida Genus: Dichondra
Order: Solanales Species: Dichondra micrantha
Family: Convolvulaceae Scientific Name Authorship: Urb.
BIN ID: Subspecies:
Identification Method:
Taxonomy Notes: Per. crawling rooting stems, pale green lvs, no fruit or flower seen Note: 1st record for San Diego County
* Barcode Index Numbers (BIN): Clustered barcode sequences that create OTUs (operational taxonomic units) closely reflective of species groupings

Specimen

Voucher Status: Reproduction:
Tissue Descriptor: Sex:
Brief Note: Life Stage:
Detailed Notes:

Collection

Country/Ocean: United States (US) Collection Date Start: 2004-04-25
Province/State: California Collection Date End:
Region/County: San Diego Coord. Source:
Sector: Coord. Accuracy:
Exact Site: Mesa top N.side of the E.W. leg of small isolated canyon abutts to S. side of Clairemont Mesa Blvd. above Tecolote Canyon Elevation: 113
Habitat: dry shade under willow tree with invading weeds and grasses & exotics; group scattered plants, fill and native soil, drainage to Tecolote canyon; full sun Elevation Accuracy:
Latitude: 32.833 Depth:
Longitude: -117.191 Depth Accuracy:
Sampling Protocol:
Collectors: Gay Dorius
Collection Note:

Ecology

Realm: Nearctic
Biome:
Ecoregion: California_coastal_sage_and_chaparral

Publications

Electropherogram Trace Files

Under development - available shortly

Controller URLs

http://portal.boldsystems.org/record/SDH960-14
http://fastapi-app:8000/api/summary?query=ids%3Aprocessid%3ASDH960-14&fields=marker_code
http://fastapi-app:8000/api/query?query=ids%3Aprocessid%3ASDH960-14&extent=limited
http://fastapi-app:8000/api/documents/eAHLTCm2KijKT04tLs5MsQp28bA0M9A1NLHOyczNLElNAQCw3Qq0?length=2

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